Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Reverse (-)

6956935 .. 6958020

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGCTCGGCGACGGGAGCCGGCGGCTACGGTGGTGGTGAAGAAGGAGGAGGTTCGTGCACCATCATCGGGAGATCGAAATCCTCGGCCGTGGCCGCCGAGAGTACGGGAAGGACCGCGAGGAGTGGAGCGACGGCGCGATCGCTTGCCTTCTCGATGCTTACATGGACAAGCTCACGCACCGAATTGGGGAAATCCGAGAGGCCGGGATTGGGAGGAGGTGGCCGTGATCGTGAGCCGATGTCCGAGGCAAACCAAGAGCGTCGAGCGGTACAAGCTCGAGAGGCACAGGATGACCAATTTTGGAAATTCGCCGAGTCATTGGCCTTGGTTCATGATAATGGAGCGCATCGTCGGCAATTCGCTTCCGGCGAAGGCCAACTCGATGATGACAGAGGCATTACTTCCTCCGTGCCACGCCTCGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGGCGATGGGTGTGGCGGATTTGGGGGTTTGGGCGGTGGGGTCGGAGCGAGAGGGTCATAGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.63

Weight (kDa)

9.59

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AccII	CGCG	2 cut(s)	119, 139
AciI	CCGC	8 cut(s)	24, 96, 117, 269, 441, 469, 487, 527
AcoI	YGGCCR	4 cut(s)	87, 93, 223, 540
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	106, 273
AfiI	CCNNNNNNNGG	3 cut(s)	69, 189, 212
AluBI	AGCT	3 cut(s)	6, 174, 278
AluI	AGCT	3 cut(s)	6, 174, 278
Alw21I	GWGCWC	2 cut(s)	8, 62
Alw44I	GTGCAC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	7 cut(s)	87, 93, 203, 223, 324, 376, 540
ApaLI	GTGCAC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	308
AsiSI	GCGATCGC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	139, 349
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	422
Bbv12I	GWGCWC	2 cut(s)	8, 62
BccI	CCATC	3 cut(s)	71, 453, 517
BceAI	ACGGC	3 cut(s)	74, 150, 210
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	25, 96, 528
BlsI	GCNGC	3 cut(s)	26, 97, 529
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	147, 358
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	5 cut(s)	84, 90, 246, 327, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 189, 212
Bse118I	RCCGGY	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	79
BseDI	CCNNGG	5 cut(s)	84, 90, 246, 327, 543
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	69, 189, 212
BseRI	GAGGAG	3 cut(s)	63, 136, 231
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	87
Bsh1236I	CGCG	2 cut(s)	119, 139
Bsh1285I	CGRYCG	3 cut(s)	90, 143, 445
BshFI	GGCC	7 cut(s)	89, 95, 205, 225, 326, 378, 542
BsiEI	CGRYCG	3 cut(s)	90, 143, 445
BsiHKAI	GWGCWC	2 cut(s)	8, 62
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	21, 206, 369
BslI	CCNNNNNNNGG	3 cut(s)	69, 189, 212
BsnI	GGCC	7 cut(s)	89, 95, 205, 225, 326, 378, 542
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	8, 62
Bsp143I	GATC	3 cut(s)	74, 140, 229
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	8 cut(s)	24, 96, 117, 269, 441, 469, 487, 527
BspANI	GGCC	7 cut(s)	89, 95, 205, 225, 326, 378, 542
BspFNI	CGCG	2 cut(s)	119, 139
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	5 cut(s)	84, 90, 246, 327, 543
BssMI	GATC	3 cut(s)	74, 140, 229
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	2 cut(s)	327, 543
Bst2BI	CACGAG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	22, 147
BstDSI	CCRYGG	2 cut(s)	90, 543
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	2 cut(s)	119, 139
BstHHI	GCGC	2 cut(s)	139, 349
BstKTI	GATC	3 cut(s)	77, 143, 232
BstMBI	GATC	3 cut(s)	74, 140, 229
BstMCI	CGRYCG	3 cut(s)	90, 143, 445
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 95, 275, 284, 355, 527
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	2 cut(s)	119, 139
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	7 cut(s)	89, 95, 205, 225, 326, 378, 542
BtgI	CCRYGG	2 cut(s)	90, 543
BtgZI	GCGATG	2 cut(s)	472, 536
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	22, 147
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	2 cut(s)	139, 349
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	105, 272
CviAII	CATG	3 cut(s)	165, 335, 544
CviQI	GTAC	2 cut(s)	105, 272
DpnI	GATC	3 cut(s)	76, 142, 231
DpnII	GATC	3 cut(s)	74, 140, 229
EaeI	YGGCCR	4 cut(s)	87, 93, 223, 540
EagI	CGGCCG	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	484
Ecl136II	GAGCTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	327, 543
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	327, 543
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	327, 543
FaeI	CATG	3 cut(s)	168, 338, 547
FaiI	YATR	5 cut(s)	166, 336, 512, 536, 545
FatI	CATG	3 cut(s)	164, 334, 543
Fnu4HI	GCNGC	3 cut(s)	25, 96, 528
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	25, 96, 528
GlaI	GCGC	2 cut(s)	138, 348
GluI	GCNGC	3 cut(s)	25, 96, 528
HaeIII	GGCC	7 cut(s)	89, 95, 205, 225, 326, 378, 542
HapII	CCGG	3 cut(s)	21, 206, 369
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	139, 349
Hin1II	CATG	3 cut(s)	168, 338, 547
Hin6I	GCGC	2 cut(s)	137, 347
HinP1I	GCGC	2 cut(s)	137, 347
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	3 cut(s)	21, 206, 369
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	199, 247, 498
Hpy188III	TCNNGA	5 cut(s)	70, 154, 233, 281, 335
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	4 cut(s)	16, 136, 267, 357
HpyAV	CCTTC	4 cut(s)	38, 105, 160, 368
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 95, 275, 284, 355, 527
Hsp92II	CATG	3 cut(s)	168, 338, 547
HspAI	GCGC	2 cut(s)	137, 347
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	74, 140, 229
LmnI	GCTCC	4 cut(s)	17, 128, 344, 498
LpnPI	CCDG	4 cut(s)	34, 219, 275, 382
LweI	GCATC	2 cut(s)	147, 358
MalI	GATC	3 cut(s)	76, 142, 231
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	74, 140, 229
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	8, 62
MluCI	AATT	5 cut(s)	185, 299, 308, 359, 429
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	3 cut(s)	21, 206, 369
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	119, 139
MwoI	GCNNNNNNNGC	6 cut(s)	17, 95, 275, 284, 355, 527
NaeI	GCCGGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	74, 140, 229
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	168, 338, 547
NlaIV	GGNNCC	1 cut(s)	19
NmeAIII	GCCGAG	3 cut(s)	65, 124, 340
PaeR7I	CTCGAG	1 cut(s)	279
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	26, 97, 529
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	143
RgaI	GCGATCGC	1 cut(s)	143
RsaI	GTAC	2 cut(s)	106, 273
RsaNI	GTAC	2 cut(s)	105, 272
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	25, 96, 528
Sau3AI	GATC	3 cut(s)	74, 140, 229
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	8, 62
SetI	ASST	5 cut(s)	8, 55, 176, 223, 280
SfaAI	GCGATCGC	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	147, 358
Sfr274I	CTCGAG	1 cut(s)	279
SgfI	GCGATCGC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	5 cut(s)	185, 299, 308, 359, 429
SsiI	CCGC	8 cut(s)	24, 96, 117, 269, 441, 469, 487, 527
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	327, 543
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	5 cut(s)	77, 155, 265, 280, 384
TasI	AATT	5 cut(s)	185, 299, 308, 359, 429
TauI	GCSGC	3 cut(s)	27, 98, 530
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.