Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041385.1

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 495

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 416 bp

tcagggtgaaaaccggggcgggtcctgtcaacagtggtggtgaagaaggaggaggaggttcgtacgccatcatcaggagattgaaatcctcggccgtggcagccggagagtaccagaaggaccgcgaggagtggaacgacggcgcgattgcttgccttctcgatgcttacatggacaagttcacgcagctgaattggggaaatctgagaggccgggattgggaggagaagaggtacaagctcgagaggcacaggatgaccaattctggaaattctccgagtcattggccttggttcatgataatggagcagatcgtcggcaattcgcttccggcgaagaccacctctgatgatgacagaggcattactttctccggtgccatgcctcagaaattaaagaggttcgaaaatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

137

Amino Acids

15.45

Weight (kDa)

8.75

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	2 cut(s)	125, 145
AciI	CCGC	2 cut(s)	19, 123
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	270, 408
AfaI	GTAC	3 cut(s)	64, 112, 235
AfiI	CCNNNNNNNGG	2 cut(s)	74, 219
AgsI	TTSAA	1 cut(s)	84
AluBI	AGCT	2 cut(s)	189, 240
AluI	AGCT	2 cut(s)	189, 240
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	3 cut(s)	92, 210, 286
ApeKI	GCWGC	2 cut(s)	100, 186
ApoI	RAATTY	2 cut(s)	270, 408
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	22, 120
AsuC2I	CCSGG	2 cut(s)	15, 214
AsuHPI	GGTGA	2 cut(s)	18, 52
AsuII	TTCGAA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	22, 120
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	112, 198
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	2 cut(s)	79, 156
BcnI	CCSGG	2 cut(s)	15, 214
BisI	GCNGC	2 cut(s)	101, 187
BlsI	GCNGC	2 cut(s)	102, 188
Bme1390I	CCNGG	2 cut(s)	15, 214
Bme18I	GGWCC	2 cut(s)	22, 120
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	22, 120
BmiI	GGNNCC	2 cut(s)	23, 378
BmrFI	CCNGG	2 cut(s)	15, 214
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	15, 214
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	14, 89, 95, 289
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 219
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	14, 89, 95, 289
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	74, 219
BseMII	CTCAG	2 cut(s)	196, 400
BseRI	GAGGAG	4 cut(s)	65, 68, 142, 238
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	112, 198
Bsh1236I	CGCG	2 cut(s)	125, 145
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	94, 212, 288
BshNI	GGYRCC	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	14, 104, 213, 331, 374
BsiWI	CGTACG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	74, 219
BsnI	GGCC	3 cut(s)	94, 212, 288
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	404
Bsp143I	GATC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	19, 123
BspANI	GGCC	3 cut(s)	94, 212, 288
BspCNI	CTCAG	2 cut(s)	197, 399
BspFNI	CGCG	2 cut(s)	125, 145
BspHI	TCATGA	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	23, 378
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	14, 89, 95, 289
BssMI	GATC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	205, 386
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	2 cut(s)	125, 145
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	311
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 246
BstSCI	CCNGG	2 cut(s)	13, 212
BstUI	CGCG	2 cut(s)	125, 145
BstV1I	GCAGC	2 cut(s)	112, 198
BstV2I	GAAGAC	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	94, 212, 288
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	296
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	22, 120
Csp6I	GTAC	3 cut(s)	63, 111, 234
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	3 cut(s)	171, 297, 381
CviJI	RGCY	6 cut(s)	94, 103, 189, 212, 240, 288
CviKI_1	RGCY	6 cut(s)	94, 103, 189, 212, 240, 288
CviQI	GTAC	3 cut(s)	63, 111, 234
DdeI	CTNAG	2 cut(s)	205, 386
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	22, 120
Eco52I	CGGCCG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	3 cut(s)	174, 300, 384
FaiI	YATR	3 cut(s)	172, 298, 382
FatI	CATG	3 cut(s)	170, 296, 380
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	101, 187
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	101, 187
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	101, 187
HaeIII	GGCC	3 cut(s)	94, 212, 288
HapII	CCGG	5 cut(s)	14, 104, 213, 331, 374
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	174, 300, 384
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	5 cut(s)	14, 104, 213, 331, 374
HphI	GGTGA	2 cut(s)	18, 52
Hpy166II	GTNNAC	2 cut(s)	30, 182
Hpy188I	TCNGA	4 cut(s)	206, 278, 348, 389
Hpy188III	TCNNGA	5 cut(s)	75, 160, 243, 266, 297
Hpy8I	GTNNAC	2 cut(s)	30, 182
Hpy99I	CGWCG	2 cut(s)	142, 319
HpyAV	CCTTC	3 cut(s)	40, 111, 166
HpyCH4III	ACNGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 246
HpyF3I	CTNAG	2 cut(s)	205, 386
Hsp92II	CATG	3 cut(s)	174, 300, 384
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	112, 198
LweI	GCATC	1 cut(s)	153
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	3 cut(s)	55, 240, 348
MluCI	AATT	6 cut(s)	192, 261, 270, 321, 391, 408
MlyI	GAGTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	5 cut(s)	14, 104, 213, 331, 374
MspR9I	CCNGG	2 cut(s)	15, 214
MvnI	CGCG	2 cut(s)	125, 145
MwoI	GCNNNNNNNGC	2 cut(s)	100, 246
NciI	CCSGG	2 cut(s)	15, 214
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	174, 300, 384
NlaIV	GGNNCC	2 cut(s)	23, 378
NmeAIII	GCCGAG	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	241
PagI	TCATGA	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
Pfl23II	CGTACG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	102, 188
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspLI	CGTACG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	23, 378
PspPI	GGNCC	2 cut(s)	22, 120
PspPPI	RGGWCCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	3 cut(s)	64, 112, 235
RsaNI	GTAC	3 cut(s)	63, 111, 234
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	2 cut(s)	101, 187
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	2 cut(s)	22, 120
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	15, 214
SetI	ASST	6 cut(s)	60, 191, 235, 242, 346, 403
SfaNI	GCATC	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	2 cut(s)	22, 120
SlaI	CTCGAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	6 cut(s)	192, 261, 270, 321, 391, 408
SsiI	CCGC	2 cut(s)	19, 123
StyD4I	CCNGG	2 cut(s)	13, 212
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	161, 242, 404
TasI	AATT	6 cut(s)	192, 261, 270, 321, 391, 408
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	2 cut(s)	100, 186
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	22, 120
XapI	RAATTY	2 cut(s)	270, 408
XhoI	CTCGAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.