Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

78541684 .. 78546961

Gene Structure 5278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG555500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACCAATTCTGGAAATTCGCCGAGTCATTGGCCTTGGTTCATGATAATGGAGCAGATCGTCGGAAATTCTCTTCCGGCGAAGGCCACCTCTGATGATGACAAAGGCATTACTTCCTCCGGTGCCACGCCTAAGAAATTAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATAAATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGCCACTGCTGTTAACAACATTTTGTATATATGCACTTCCATTAATTTGTCGAGTGAAATATGCACGATCATTGTTAATAGTCTGTTTTGTTGTATAACAATGCTGATTGCGAGAGAAGTTGTAATGGCCTACCGCAGTGGGGTGGAGAACGGCGCCGTGGAAGGGGAAATGGAGGCCTCAACAACCAAGTTTCTTTTCCTCGCCACACATTGCCTTGCTCTTTTGGGGCCGTTTTATTTCAACTGGTCTGCGTTTTGGCTTGCTGTGGCACTCTATTTTGTTACATGTGTCAGTATAACCCTGTCTTTCCATAGAAACCTCGCTCACCGCAGCTTCAAGCTTCCCAAATGGCTCGAGTACTCTTTTGCCTACTGCGGCGTCCTTTCACTCCAGGGAAGTCCAATTGAATGGGTGAGCATACACAGAGTCCATCATCAGTATACCGACACATTAGATGACCTTCACAGTCCCATTAAGGGATTTTGGTACAGTCATTTTGGTTGGATCGTTGACTATCATTCTCGGTTTCCCGACGCATTAGAATTCAAGAATGTTGGAGACTTAAAGAAGCAGTGGTACTATAGGTTTCTTCACTACACGTATCCTTGTCACTCTGTTGCTCTTGGAATTCTGCTATATGCTGGAGGAGGGCTACCATTCCTGGTTTGGGGAATGGTAAGCTTGCTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

314

Amino Acids

35.34

Weight (kDa)

8.93

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	165 - 312	2.4e-08	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 404
AccI	GTMKAC	1 cut(s)	692
AciI	CCGC	3 cut(s)	385, 580, 627
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	4 cut(s)	16, 67, 794, 879
AcyI	GRCGYC	2 cut(s)	405, 630
AfaI	GTAC	3 cut(s)	611, 740, 830
AfiI	CCNNNNNNNGG	4 cut(s)	391, 414, 728, 919
AflIII	ACRYGT	2 cut(s)	536, 849
AgsI	TTSAA	5 cut(s)	229, 493, 589, 659, 799
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	642, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	4 cut(s)	251, 585, 592, 933
AluI	AGCT	4 cut(s)	251, 585, 592, 933
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	5 cut(s)	32, 84, 378, 426, 479
ApeKI	GCWGC	4 cut(s)	190, 242, 251, 582
ApoI	RAATTY	4 cut(s)	16, 67, 794, 879
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	569, 676
AvaI	CYCGRG	1 cut(s)	605
BanI	GGYRCC	2 cut(s)	122, 404
BarI	GAAGNNNNNNTAC	2 cut(s)	812, 844
BbvI	GCAGC	4 cut(s)	202, 229, 238, 594
BccI	CCATC	1 cut(s)	690
BceAI	ACGGC	3 cut(s)	392, 418, 466
BciT130I	CCWGG	2 cut(s)	644, 914
BciVI	GTATCC	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	804
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 248
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	864
BisI	GCNGC	5 cut(s)	191, 243, 252, 583, 628
BlsI	GCNGC	5 cut(s)	192, 244, 253, 584, 629
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	644, 914
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	124, 406, 480
BmrFI	CCNGG	2 cut(s)	644, 914
BpmI	CTGGAG	2 cut(s)	626, 915
BsaAI	YACGTR	1 cut(s)	852
BsaHI	GRCGYC	2 cut(s)	405, 630
BsaJI	CCNNGG	3 cut(s)	35, 408, 643
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 414, 728, 919
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	644, 914
BseDI	CCNNGG	3 cut(s)	35, 408, 643
BseLI	CCNNNNNNNGG	4 cut(s)	391, 414, 728, 919
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	912
BseXI	GCAGC	4 cut(s)	202, 229, 238, 594
BshFI	GGCC	5 cut(s)	34, 86, 380, 428, 481
BshNI	GGYRCC	2 cut(s)	122, 404
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	77, 120
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	4 cut(s)	391, 414, 728, 919
BsmAI	GTCTC	1 cut(s)	804
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	5 cut(s)	34, 86, 380, 428, 481
BsoBI	CYCGRG	1 cut(s)	605
Bsp143I	GATC	3 cut(s)	57, 318, 756
BspACI	CCGC	3 cut(s)	385, 580, 627
BspANI	GGCC	5 cut(s)	34, 86, 380, 428, 481
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	124, 406, 480
BspPI	GGATC	1 cut(s)	764
BspT107I	GGYRCC	2 cut(s)	122, 404
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	35, 408, 643
BssMI	GATC	3 cut(s)	57, 318, 756
BssNAI	GTATAC	1 cut(s)	693
BssNI	GRCGYC	2 cut(s)	405, 630
BssT1I	CCWWGG	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	644, 914
Bst4CI	ACNGT	2 cut(s)	719, 743
Bst6I	CTCTTC	2 cut(s)	78, 211
BstACI	GRCGYC	2 cut(s)	405, 630
BstBAI	YACGTR	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	513, 935
BstDEI	CTNAG	2 cut(s)	132, 177
BstDSI	CCRYGG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	60, 321, 759
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	3 cut(s)	57, 318, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 251, 257
BstNI	CCWGG	2 cut(s)	644, 914
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	642, 912
BstSFI	CTRYAG	1 cut(s)	832
BstV1I	GCAGC	4 cut(s)	202, 229, 238, 594
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstZ17I	GTATAC	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	5 cut(s)	34, 86, 380, 428, 481
BtgI	CCRYGG	1 cut(s)	408
BtsI	GCAGTG	3 cut(s)	255, 394, 830
BtsIMutI	CAGTG	4 cut(s)	241, 255, 394, 830
Cac8I	GCNNGC	2 cut(s)	513, 935
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	2 cut(s)	619, 794
Csp6I	GTAC	3 cut(s)	610, 739, 829
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	2 cut(s)	43, 537
CviQI	GTAC	3 cut(s)	610, 739, 829
DdeI	CTNAG	2 cut(s)	132, 177
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	3 cut(s)	59, 320, 758
DpnII	GATC	3 cut(s)	57, 318, 756
Eam1104I	CTCTTC	2 cut(s)	78, 211
EarI	CTCTTC	2 cut(s)	78, 211
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	605
EcoRI	GAATTC	2 cut(s)	794, 879
EcoRII	CCWGG	2 cut(s)	642, 912
EcoT14I	CCWWGG	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	46, 540
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	2 cut(s)	42, 536
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	191, 243, 252, 583, 628
Fsp4HI	GCNGC	5 cut(s)	191, 243, 252, 583, 628
FspBI	CTAG	2 cut(s)	165, 248
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	5 cut(s)	191, 243, 252, 583, 628
GsuI	CTGGAG	2 cut(s)	626, 915
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	5 cut(s)	34, 86, 380, 428, 481
HapII	CCGG	2 cut(s)	77, 120
HgaI	GACGC	2 cut(s)	619, 794
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	2 cut(s)	405, 630
Hin1II	CATG	2 cut(s)	46, 540
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	2 cut(s)	265, 763
HindII	GTYRAC	2 cut(s)	265, 763
HindIII	AAGCTT	2 cut(s)	590, 931
HinfI	GANTC	2 cut(s)	25, 678
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	77, 120
HphI	GGTGA	2 cut(s)	569, 676
Hpy166II	GTNNAC	3 cut(s)	265, 693, 763
Hpy188I	TCNGA	3 cut(s)	65, 94, 180
Hpy188III	TCNNGA	4 cut(s)	12, 43, 782, 799
Hpy8I	GTNNAC	3 cut(s)	265, 693, 763
Hpy99I	CGWCG	2 cut(s)	65, 788
HpyAV	CCTTC	3 cut(s)	76, 407, 722
HpyCH4III	ACNGT	2 cut(s)	719, 743
HpyCH4IV	ACGT	1 cut(s)	851
HpyCH4V	TGCA	4 cut(s)	152, 158, 285, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 251, 257
HpyF3I	CTNAG	2 cut(s)	132, 177
HpySE526I	ACGT	1 cut(s)	851
Hsp92I	GRCGYC	2 cut(s)	405, 630
Hsp92II	CATG	2 cut(s)	46, 540
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	57, 318, 756
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	4 cut(s)	202, 229, 238, 594
MaeI	CTAG	2 cut(s)	165, 248
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	3 cut(s)	172, 532, 860
MalI	GATC	3 cut(s)	59, 320, 758
MboI	GATC	3 cut(s)	57, 318, 756
MboII	GAAGA	3 cut(s)	65, 228, 833
MfeI	CAATTG	1 cut(s)	654
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	34, 687
MmeI	TCCRAC	3 cut(s)	43, 734, 787
MnlI	CCTC	8 cut(s)	100, 127, 418, 439, 461, 581, 890, 893
MseI	TTAA	7 cut(s)	140, 207, 264, 294, 327, 726, 815
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	77, 120
MspR9I	CCNGG	2 cut(s)	644, 914
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	644, 914
MwoI	GCNNNNNNNGC	3 cut(s)	248, 251, 257
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	3 cut(s)	57, 318, 756
NlaIII	CATG	2 cut(s)	46, 540
NlaIV	GGNNCC	3 cut(s)	124, 406, 480
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	860
NspI	RCATGY	1 cut(s)	540
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	428
PciI	ACATGT	1 cut(s)	536
PkrI	GCNGC	5 cut(s)	192, 244, 253, 584, 629
PleI	GAGTC	2 cut(s)	33, 686
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	2 cut(s)	33, 686
Ppu21I	YACGTR	1 cut(s)	852
PscI	ACATGT	1 cut(s)	536
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	642, 912
PspGI	CCWGG	2 cut(s)	642, 912
PspN4I	GGNNCC	3 cut(s)	124, 406, 480
PspPI	GGNCC	1 cut(s)	479
PspXI	VCTCGAGB	1 cut(s)	605
RsaI	GTAC	3 cut(s)	611, 740, 830
RsaNI	GTAC	3 cut(s)	610, 739, 829
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	7 cut(s)	140, 207, 264, 294, 327, 726, 815
SatI	GCNGC	5 cut(s)	191, 243, 252, 583, 628
Sau3AI	GATC	3 cut(s)	57, 318, 756
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	34, 687
ScrFI	CCNGG	2 cut(s)	644, 914
SetI	ASST	9 cut(s)	92, 253, 573, 587, 594, 714, 839, 854, 935
SfcI	CTRYAG	1 cut(s)	832
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	3 cut(s)	385, 580, 627
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	165, 248
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	642, 912
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	719, 743
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	2 cut(s)	302, 606
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	630
Tru1I	TTAA	7 cut(s)	140, 207, 264, 294, 327, 726, 815
Tru9I	TTAA	7 cut(s)	140, 207, 264, 294, 327, 726, 815
TscAI	CASTG	4 cut(s)	241, 262, 394, 830
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	4 cut(s)	190, 242, 251, 582
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	241, 262, 394, 830
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	4 cut(s)	16, 67, 794, 879
XceI	RCATGY	1 cut(s)	540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	915
XhoI	CTCGAG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	2 cut(s)	165, 248
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.