Rh1CG168000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
36793873 .. 36804224
10352 bp
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UTR
Exon/CDS
Intron
Rh1CG168000.1

Sequence Viewer

Length: 402 bp
ATGAAGAGGCAATCTAAATCTGCTGCTACTAGTTCCAGTGCTAATCCGAAATCAACTTCTTCATCTCAGCTGGCACTGCTGCTGACAACATTGACCCAAAGGTTGTATGCACTTCCATTAATTCGTCGAGTGACATATGCACGATCATTGTTAATAGTCTGTTTTGTTGTGTTAGTTCCATTAAATGAGTGTCGATATGTGTTTTTTTATTGCACATATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTGCCGCAGTGGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTGGGGGTTTGGGCGGTGGGGTTGGAGCGGAGGGTCATGGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

9.13

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 349
AciI CCGC 6 cut(s) 257, 289, 317, 335, 349, 374
AcoI YGGCCR 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 263
AhlI ACTAGT 1 cut(s) 29
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AoxI GGCC 2 cut(s) 250, 387
ApeKI GCWGC 2 cut(s) 23, 79
AseI ATTAAT 1 cut(s) 119
BbvI GCAGC 2 cut(s) 10, 66
BccI CCATC 2 cut(s) 301, 364
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 1 cut(s) 30
BisI GCNGC 4 cut(s) 24, 80, 257, 375
BlsI GCNGC 4 cut(s) 25, 81, 258, 376
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 10, 66
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 2 cut(s) 252, 389
BsiEI CGRYCG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 2 cut(s) 252, 389
Bsp143I GATC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 6 cut(s) 257, 289, 317, 335, 349, 374
BspANI GGCC 2 cut(s) 252, 389
BspCNI CTCAG 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 72, 254
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 390
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 3 cut(s) 76, 301, 374
BstV1I GCAGC 2 cut(s) 10, 66
BsuRI GGCC 2 cut(s) 252, 389
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 383
BtsI GCAGTG 2 cut(s) 74, 266
BtsIMutI CAGTG 3 cut(s) 43, 74, 266
Cac8I GCNNGC 2 cut(s) 72, 254
CviAII CATG 2 cut(s) 358, 391
CviJI RGCY 4 cut(s) 70, 252, 304, 389
CviKI_1 RGCY 4 cut(s) 70, 252, 304, 389
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 387
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 361, 394
FaiI YATR 9 cut(s) 108, 136, 138, 198, 217, 219, 359, 383, 392
FatI CATG 2 cut(s) 357, 390
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 24, 80, 257, 375
Fsp4HI GCNGC 4 cut(s) 24, 80, 257, 375
FspBI CTAG 1 cut(s) 30
GluI GCNGC 4 cut(s) 24, 80, 257, 375
HaeIII GGCC 2 cut(s) 252, 389
Hin1II CATG 2 cut(s) 361, 394
Hpy188I TCNGA 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 110, 140, 213, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 301, 374
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 2 cut(s) 361, 394
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 3 cut(s) 49, 56, 266
Lsp1109I GCAGC 2 cut(s) 10, 66
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 145
MbiI CCGCTC 1 cut(s) 349
MboI GATC 1 cut(s) 143
MboII GAAGA 2 cut(s) 16, 51
MfeI CAATTG 1 cut(s) 277
MluCI AATT 2 cut(s) 120, 277
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 2 cut(s) 263, 345
MseI TTAA 3 cut(s) 119, 152, 182
MspA1I CMGCKG 1 cut(s) 70
MunI CAATTG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 76, 301, 374
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 136
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 361, 394
NmuCI GTSAC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 25, 81, 258, 376
PshBI ATTAAT 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 70
SaqAI TTAA 3 cut(s) 119, 152, 182
SatI GCNGC 4 cut(s) 24, 80, 257, 375
Sau3AI GATC 1 cut(s) 143
SetI ASST 3 cut(s) 72, 104, 274
SgeI CNNG 9 cut(s) 42, 48, 83, 140, 153, 247, 265, 370, 390
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 2 cut(s) 120, 277
SsiI CCGC 6 cut(s) 257, 289, 317, 335, 349, 374
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 390
TaqI TCGA 2 cut(s) 127, 193
TasI AATT 2 cut(s) 120, 277
TauI GCSGC 2 cut(s) 259, 377
Tru1I TTAA 3 cut(s) 119, 152, 182
Tru9I TTAA 3 cut(s) 119, 152, 182
TscAI CASTG 3 cut(s) 43, 81, 266
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 23, 79
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 17, 51
TspRI CASTG 3 cut(s) 43, 81, 266
VspI ATTAAT 1 cut(s) 119
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.