Rh4BG396300
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
54780832 .. 54781492
661 bp
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UTR
Exon/CDS
Intron
Rh4BG396300.1

Sequence Viewer

Length: 372 bp
ATGACCAATTTTGGAAACTCGCCTAGTCATTGGCCTTGGTTCAAGATAATGGAGCAGATCGTTGACAATTCGCTTCCGGCGAAGGCCACCTTTGATGATGACAGAGGCATTACTTCCTCCGGTGCCACGCCTCAGAAATCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATAAATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTGCTGCTAACAACATTGACCCAAAGATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTGCCGCAGTGGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.24

Weight (kDa)

10.28

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 2 cut(s) 322, 354
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 2 cut(s) 43, 229
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 3 cut(s) 32, 84, 315
ApeKI GCWGC 3 cut(s) 190, 242, 260
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 3 cut(s) 202, 229, 247
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 24, 165, 248
BisI GCNGC 4 cut(s) 191, 243, 261, 322
BlsI GCNGC 4 cut(s) 192, 244, 262, 323
BmiI GGNNCC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 146, 191
BseXI GCAGC 3 cut(s) 202, 229, 247
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 3 cut(s) 34, 86, 317
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 2 cut(s) 77, 120
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 3 cut(s) 34, 86, 317
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 2 cut(s) 322, 354
BspANI GGCC 3 cut(s) 34, 86, 317
BspCNI CTCAG 2 cut(s) 145, 190
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 253, 319
BstDEI CTNAG 2 cut(s) 132, 177
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 3 cut(s) 248, 257, 366
BstV1I GCAGC 3 cut(s) 202, 229, 247
BsuRI GGCC 3 cut(s) 34, 86, 317
BtsI GCAGTG 2 cut(s) 255, 331
BtsIMutI CAGTG 3 cut(s) 241, 255, 331
Cac8I GCNNGC 2 cut(s) 253, 319
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviJI RGCY 6 cut(s) 34, 86, 193, 251, 317, 369
CviKI_1 RGCY 6 cut(s) 34, 86, 193, 251, 317, 369
DdeI CTNAG 2 cut(s) 132, 177
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FalI AAGNNNNNCTT 2 cut(s) 74, 106
Fnu4HI GCNGC 4 cut(s) 191, 243, 261, 322
Fsp4HI GCNGC 4 cut(s) 191, 243, 261, 322
FspBI CTAG 3 cut(s) 24, 165, 248
GluI GCNGC 4 cut(s) 191, 243, 261, 322
HaeIII GGCC 3 cut(s) 34, 86, 317
HapII CCGG 2 cut(s) 77, 120
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaII CCGG 2 cut(s) 77, 120
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 135, 180
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 152, 158, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 257, 366
HpyF3I CTNAG 2 cut(s) 132, 177
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 90, 133, 183, 237, 331
Lsp1109I GCAGC 3 cut(s) 202, 229, 247
MaeI CTAG 3 cut(s) 24, 165, 248
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 228
MfeI CAATTG 1 cut(s) 342
MluCI AATT 5 cut(s) 7, 67, 159, 198, 342
MnlI CCTC 4 cut(s) 98, 127, 141, 328
MseI TTAA 1 cut(s) 207
MspI CCGG 2 cut(s) 77, 120
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 248, 257, 366
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PkrI GCNGC 4 cut(s) 192, 244, 262, 323
PspN4I GGNNCC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 191, 243, 261, 322
Sau3AI GATC 1 cut(s) 57
SetI ASST 3 cut(s) 92, 253, 339
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 5 cut(s) 7, 67, 159, 198, 342
SsiI CCGC 2 cut(s) 322, 354
SspMI CTAG 3 cut(s) 24, 165, 248
StyI CCWWGG 1 cut(s) 35
TasI AATT 5 cut(s) 7, 67, 159, 198, 342
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 241, 262, 331
TseI GCWGC 3 cut(s) 190, 242, 260
TspRI CASTG 3 cut(s) 241, 262, 331
XspI CTAG 3 cut(s) 24, 165, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.