Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

9651485 .. 9652339

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACCTTGAACTTGAGCTCATATCAGTTAACCGGCTCACTCTCTCCCCATATAGGAAACCTCACTTTCCTTTCTGGCCTCAACCTTGAACTCAACAATTTCCACAGTAGTCTCCCACAAGAAATTGGCCATTTATTCAGGCTCAAATACCTTAGCCTCTCCAACAATTCATTTTCTGGGGAAATCCCACCAAATCTCTCCAATTGTTCTAGTCTAATTTGGCTTCGTTTAGGCTTCAACAAGTTGATTGGGAAAATCCCATTTGAATTAGGCTCATTGCAAAAGCTAGAGAGAGTTCAACTTCACTACAACAGCCTCAGTGGACTGCTTCCAAGTTCTGTAGGCAAACTTTCCTCAGTTAGATCTCTGTCTCTGGCAGTTAACAACTTGGAGGGAAAGATACCAGAGTCACTGGGCTGCTTGAAGAATTTGGAATTCCTTGGATTTGGGGTTAATCAATTTTCTGGTATGGTCCCATCCTCAGTTTACAACCTTTCTTCTCTTACAAGGCTTAGTTTACCATACAATCAACTAGAGGGGAACTTGCCTTCAGACTTGGGTTTCACTCTTCCTAACTTGCTAGTCTTAAATTTGGGTCACAATCTCTTCACTGGAACCTTACCAGCATCACTGTCCAATGCGACAACTCTTCCTGAATTCGATGTCAATGGGAGCAATTTCACTGGAGAAGTTGCAAATGATTTTGGAGGCTTAACTAGTTTATGGTGGCTGATTCTTGCTTCAAATTCCTTGGGCACAGTACAAGCAAATGACTTGAGTTTCTTTAACTCTTTGAGCAAATGCAGGAACTTACAAATTCTTGATTTAAGCGATAACCAATTTGGAGGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

284

Amino Acids

30.75

Weight (kDa)

5.93

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	95 - 149	1.6e-06	Leucine rich repeat
LRR_14	PF23598	136 - 279	1.2e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	6 cut(s)	427, 434, 589, 656, 745, 816
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	10, 89, 238, 266, 299, 424, 744
AhlI	ACTAGT	1 cut(s)	716
AluBI	AGCT	2 cut(s)	18, 286
AluI	AGCT	2 cut(s)	18, 286
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	116, 375
AoxI	GGCC	2 cut(s)	76, 127
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	6 cut(s)	427, 434, 589, 656, 745, 816
AspS9I	GGNCC	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	758
BaeI	ACNNNNGTAYC	2 cut(s)	392, 425
BalI	TGGCCA	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	116, 375
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	5 cut(s)	210, 287, 533, 581, 717
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	474, 616
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	635
BmuI	ACTGGG	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	34, 796
BsaJI	CCNNGG	2 cut(s)	439, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	417, 616, 688
Bse3DI	GCAATG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	439, 750
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	331, 369, 495
BseNI	ACTGG	3 cut(s)	417, 616, 688
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	2 cut(s)	78, 129
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	116, 375
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	78, 129
Bsp1286I	GDGCHC	2 cut(s)	20, 758
Bsp143I	GATC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	78, 129
BspCNI	CTCAG	3 cut(s)	330, 368, 494
BspLI	GGNNCC	2 cut(s)	474, 616
BsrDI	GCAATG	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	417, 616, 688
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	439, 750
BssMI	GATC	1 cut(s)	362
BssT1I	CCWWGG	2 cut(s)	439, 750
Bst4CI	ACNGT	3 cut(s)	107, 633, 760
Bst6I	CTCTTC	3 cut(s)	573, 611, 654
BstDEI	CTNAG	5 cut(s)	152, 317, 355, 481, 512
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	2 cut(s)	116, 375
BstMBI	GATC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	758
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	78, 129
BtsCI	GGATG	1 cut(s)	476
BtsIMutI	CAGTG	5 cut(s)	325, 410, 609, 629, 681
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	761
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	5 cut(s)	152, 317, 355, 481, 512
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	573, 611, 654
EarI	CTCTTC	3 cut(s)	573, 611, 654
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	439, 750
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	2 cut(s)	434, 656
EcoT14I	CCWWGG	2 cut(s)	439, 750
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	439, 750
FaiI	YATR	6 cut(s)	22, 51, 53, 470, 523, 724
FaqI	GGGAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	5 cut(s)	210, 287, 533, 581, 717
GluI	GCNGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	78, 129
HapII	CCGG	1 cut(s)	33
HincII	GTYRAC	2 cut(s)	30, 382
HindII	GTYRAC	2 cut(s)	30, 382
HinfI	GANTC	2 cut(s)	407, 733
HpaI	GTTAAC	2 cut(s)	30, 382
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	5 cut(s)	30, 323, 382, 487, 518
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	2 cut(s)	653, 821
Hpy8I	GTNNAC	5 cut(s)	30, 323, 382, 487, 518
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	3 cut(s)	107, 633, 760
HpyCH4V	TGCA	3 cut(s)	280, 695, 804
HpyF3I	CTNAG	5 cut(s)	152, 317, 355, 481, 512
KspAI	GTTAAC	2 cut(s)	30, 382
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	672
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	5 cut(s)	210, 287, 533, 581, 717
MaeIII	GTNAC	2 cut(s)	408, 596
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	5 cut(s)	436, 489, 560, 598, 641
MfeI	CAATTG	1 cut(s)	202
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	20, 758
MlsI	TGGCCA	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	7 cut(s)	29, 381, 453, 587, 713, 786, 827
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	202
NdeII	GATC	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	474, 616
NmuCI	GTSAC	2 cut(s)	408, 596
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	1 cut(s)	419
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	474, 616
PspPI	GGNCC	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	7 cut(s)	29, 381, 453, 587, 713, 786, 827
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	20, 758
SetI	ASST	8 cut(s)	8, 20, 63, 87, 153, 288, 495, 620
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	2 cut(s)	13, 775
SmoI	CTYRAG	2 cut(s)	13, 775
SpeI	ACTAGT	1 cut(s)	716
SspMI	CTAG	5 cut(s)	210, 287, 533, 581, 717
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	439, 750
TaaI	ACNGT	3 cut(s)	107, 633, 760
TaqI	TCGA	1 cut(s)	660
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	7 cut(s)	29, 381, 453, 587, 713, 786, 827
Tru9I	TTAA	7 cut(s)	29, 381, 453, 587, 713, 786, 827
TscAI	CASTG	5 cut(s)	325, 417, 616, 636, 688
TseFI	GTSAC	2 cut(s)	408, 596
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	2 cut(s)	408, 596
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	5 cut(s)	325, 417, 616, 636, 688
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	6 cut(s)	427, 434, 589, 656, 745, 816
XspI	CTAG	5 cut(s)	210, 287, 533, 581, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.