Rorug03G0119400
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
9652349 .. 9654520
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0119400.1

Sequence Viewer

Length: 1992 bp
ATGTCCAACTTCTCAAACCAACTTGTGTCACTGAGACTGGGAAGAAACCAATTATCTGGAAGCTTCCCTACTGGAATATTTGAGAACCTTGTTAATCTGACAGAACTGATGATGGAGAAGAACAATTTCAGTGGCGGGATTCCTGCCATTATTGGTAACCTCTGGATGCTGCGGCGATTAGATTTATCTGCAAACGAGTTTTCTGGCCAAATTCCATCATCCATAGCCAATATGAGTCAATTGTATGCTCTCTATCTTCAAAACAATCATTTCACAGGTCCTATTCCTTCAAGTTTTGGGAACCTTTCAAACTTGCAAGAGCTAGACCTTTCTCAGAATTATCTCAATGGAATCATACCAGAAAAAGTTATGAGCCTTTCTTCTCTGACCATTTCCCTAAACCTTTCTCAAAACCGATTGACTGGTTCCTTGCCCTCAAAAGTTGGAGACTTGAAAAATCTAGGGAACTTGGATCTTTCTGAGAATATATTGTCAGGAGAAATTCCCAGTAGCCTTGCTAGTTGTGTATCCTTAGAACACCTTCACTTGGAAGGTAACTTTTTTGAAGGAACCATTCCTTCATCTTTTAGATCCTTGAGAGGTCTTCAAGACTTGGATCTTTCACATAACAACTTATCTGGCCAAATTCCTGAATTTTTTCAACTTATTTCCCTTGTGAACTTAAATCTTTCCTTTAACAATTTTGAGGGTCAAGTGCCAACAGGAGGAGTTTTCAAATATGCAACTGTCACTTCAATAGCAGGAAATGGAAAGCTTTGTGGAGGCATACCTGAATTTCAATTGCCGGTTTGCACTGCTACTAAGCCAAAGAAAAGAAAGATGTCTCAAGGACTGAAATTCATGATCTTATTGCTTTCTGGACTTTTGGGGTTAGTTTTGATCATGTCTCTTCTAGTTATTTATCGGTTAAGGAAGGCCAAAACACCACCCTCTACAGAAGCTTCACCAACTAAGGAATTGCATTTGAAGATATCCTATGAAACTCTCCTTCAAGCTACCGGAGGATTTTCTCCTGCCAACCTAATTGGTTCTGGTAGCTTTGGTTCTGTCTACAAAGGGATTCTTGATGAAGTAGTTGTGGCAGTAAAGGTACTCTACTTACATCAACCAGATGCTCTAAAAAGCTTCTCAGCTGAATTTGAAGCCTTGAGAAGTATTCGGCACCGGAATCTTGTGAAAGTCTTAACTGCCTGCTCAAGCGTTGATTTTCAAGGTAATGAGTTTAAAGCTCTTGTCTATGAGTATATGCCAAATGGGAGTCTGGAGAGTTGGCTACATCCACTTTCAGAAGCTGATGACTTAAATGGTGACTTGAGGATCCTTAGTCTTCAACAAAGATTGAACATTGCCATTGATGTGGCCTCAGCTCTGGATTATCTTCATCACCATTGTGAAGATCAGATCGTTCACTGTGATCTGAAGCCAAGCAATATCCTACTCGACAATAATATGACTGCACATGTGGGTGATTTTGGGTTGGCCAGGTTCATTCCAGAAGCTTCAAGTAGATCTCCTATCAATCAAACCAGCTCAGTAGGACTGAAGGGAACTGTTGGCTATGCTGCACCAGAGTATGGCATGGGAAGCAAGGTCACAACTTACGGCGATGTGTACAGCTTTGGGATACTCTTGTTAGAAATGTTCACAGGGAAGAAGCCCACTGATGACATGTTTAAAGACGGACTGCAGCTCCATAATTTTGTTAAGAATGCATTGCCTGAACACATATCAGAAGTTTCAGAACCATTGTTTGTAGAAGGAGGGGAAGGAAAAGACGATCACTTGACTAGTGAAGAGAAATGCATTGTGGGGCAGAGAAAAAATGACCTAAATCAAGAGTGCCTAATTGCAATACTCAGAATTGGAGTTGCTTGTTCAGTGGAATCACCTAGAGGGAGAATGGATATCAGTCATGTTGTTAAGGAGTTACAGTTAGTCAGAGACACTCTTATTGGATCTGGAGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

663

Amino Acids

72.45

Weight (kDa)

5.75

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 11 - 113 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 80 - 140 1.3e-10 Leucine rich repeat
LRR_14 PF23598 133 - 234 1.6e-06 Leucine-rich repeat region
LRR_8 PF13855 177 - 235 2.8e-07 Leucine rich repeat
Pkinase PF00069 347 - 568 2.4e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 348 - 566 6.1e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1182
AccB7I CCANNNNNTGG 1 cut(s) 1595
AccI GTMKAC 1 cut(s) 1071
AciI CCGC 2 cut(s) 135, 172
AclWI GGATC 6 cut(s) 480, 585, 624, 1333, 1346, 1984
AcoI YGGCCR 3 cut(s) 205, 640, 1500
AcsI RAATTY 7 cut(s) 210, 501, 645, 653, 794, 857, 1157
AcuI CTGAAG 2 cut(s) 1460, 1583
AfaI GTAC 2 cut(s) 1113, 1634
AfiI CCNNNNNNNGG 3 cut(s) 547, 725, 1595
AflIII ACRYGT 2 cut(s) 1480, 1689
AhlI ACTAGT 1 cut(s) 1808
AjnI CCWGG 1 cut(s) 1502
AleI CACNNNNGTG 1 cut(s) 1410
Alw26I GTCTC 5 cut(s) 28, 441, 849, 912, 1956
AlwI GGATC 6 cut(s) 480, 585, 624, 1333, 1346, 1984
AlwNI CAGNNNCTG 1 cut(s) 1313
AoxI GGCC 5 cut(s) 205, 640, 936, 1380, 1500
ApeKI GCWGC 3 cut(s) 169, 1583, 1708
ApoI RAATTY 7 cut(s) 210, 501, 645, 653, 794, 857, 1157
Asp700I GAANNNNTTC 3 cut(s) 125, 540, 657
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 5 cut(s) 957, 1340, 1397, 1499, 1899
AvaII GGWCC 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 1637, 1670
BalI TGGCCA 3 cut(s) 207, 642, 1502
BamHI GGATCC 1 cut(s) 1338
BanI GGYRCC 1 cut(s) 1182
BarI GAAGNNNNNNTAC 2 cut(s) 52, 84
BbsI GAAGAC 2 cut(s) 596, 1340
BbvCI CCTCAGC 1 cut(s) 1384
BbvI GCAGC 3 cut(s) 156, 1570, 1720
BccI CCATC 2 cut(s) 106, 223
BceAI ACGGC 1 cut(s) 1639
BciT130I CCWGG 1 cut(s) 1504
BciVI GTATCC 2 cut(s) 538, 1638
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 5 cut(s) 28, 441, 849, 912, 1956
BcuI ACTAGT 1 cut(s) 1808
BfaI CTAG 6 cut(s) 323, 461, 519, 914, 1809, 1911
BfmI CTRYAG 2 cut(s) 954, 1706
BfuI GTATCC 2 cut(s) 538, 1638
BglII AGATCT 1 cut(s) 1529
BisI GCNGC 4 cut(s) 170, 173, 1584, 1709
BlsI GCNGC 4 cut(s) 171, 174, 1585, 1710
Bme1390I CCNGG 1 cut(s) 1504
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 5 cut(s) 302, 427, 571, 1184, 1340
BmrFI CCNGG 1 cut(s) 1504
BmrI ACTGGG 2 cut(s) 47, 501
BmsI GCATC 2 cut(s) 156, 1123
BmuI ACTGGG 2 cut(s) 47, 501
BpiI GAAGAC 2 cut(s) 596, 1340
BpmI CTGGAG 1 cut(s) 1304
Bpu10I CCTNAGC 1 cut(s) 1384
BpuEI CTTGAG 5 cut(s) 616, 831, 1189, 1201, 1354
BsaWI WCCGGW 2 cut(s) 1019, 1185
BsaXI ACNNNNNCTCC 4 cut(s) 1695, 1725, 1937, 1967
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 725, 1595
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 4 cut(s) 42, 76, 427, 507
Bse3DI GCAATG 2 cut(s) 1365, 1733
BseBI CCWGG 1 cut(s) 1504
BseGI GGATG 3 cut(s) 171, 218, 1297
BseLI CCNNNNNNNGG 3 cut(s) 547, 725, 1595
BseMI GCAATG 2 cut(s) 1365, 1733
BseMII CTCAG 7 cut(s) 23, 347, 471, 1164, 1398, 1566, 1891
BseNI ACTGG 4 cut(s) 42, 76, 427, 507
BseRI GAGGAG 1 cut(s) 741
BseXI GCAGC 3 cut(s) 156, 1570, 1720
BsgI GTGCAG 2 cut(s) 1461, 1569
BshFI GGCC 5 cut(s) 207, 642, 938, 1382, 1502
BshNI GGYRCC 1 cut(s) 1182
BsiSI CCGG 3 cut(s) 806, 1020, 1186
BslI CCNNNNNNNGG 3 cut(s) 547, 725, 1595
BsmAI GTCTC 5 cut(s) 28, 441, 849, 912, 1956
BsmI GAATGC 1 cut(s) 1735
BsnI GGCC 5 cut(s) 207, 642, 938, 1382, 1502
Bsp1407I TGTACA 1 cut(s) 1632
BspACI CCGC 2 cut(s) 135, 172
BspANI GGCC 5 cut(s) 207, 642, 938, 1382, 1502
BspCNI CTCAG 7 cut(s) 24, 346, 472, 1163, 1397, 1565, 1890
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 5 cut(s) 302, 427, 571, 1184, 1340
BspMAI CTGCAG 1 cut(s) 1710
BspPI GGATC 6 cut(s) 480, 585, 624, 1333, 1346, 1984
BspT107I GGYRCC 1 cut(s) 1182
BsrDI GCAATG 2 cut(s) 1365, 1733
BsrFI RCCGGY 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 1632
BsrI ACTGG 4 cut(s) 42, 76, 427, 507
BssAI RCCGGY 1 cut(s) 805
Bst2UI CCWGG 1 cut(s) 1504
Bst4CI ACNGT 4 cut(s) 748, 1433, 1573, 1953
Bst6I CTCTTC 2 cut(s) 915, 1809
BstAUI TGTACA 1 cut(s) 1632
BstC8I GCNNGC 1 cut(s) 1213
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 3 cut(s) 171, 218, 1297
BstMAI GTCTC 5 cut(s) 28, 441, 849, 912, 1956
BstMWI GCNNNNNNNGC 1 cut(s) 1605
BstNI CCWGG 1 cut(s) 1504
BstNSI RCATGY 2 cut(s) 1484, 1693
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 1502
BstSFI CTRYAG 2 cut(s) 954, 1706
BstV1I GCAGC 3 cut(s) 156, 1570, 1720
BstV2I GAAGAC 2 cut(s) 596, 1340
BstX2I RGATCY 6 cut(s) 472, 590, 616, 1338, 1529, 1976
BstXI CCANNNNNNTGG 2 cut(s) 56, 1378
BstYI RGATCY 6 cut(s) 472, 590, 616, 1338, 1529, 1976
BsuI GTATCC 2 cut(s) 538, 1638
BsuRI GGCC 5 cut(s) 207, 642, 938, 1382, 1502
BtgZI GCGATG 1 cut(s) 1641
BtsCI GGATG 3 cut(s) 171, 218, 1297
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 6 cut(s) 29, 136, 813, 1429, 1680, 1905
Cac8I GCNNGC 1 cut(s) 1213
CaiI CAGNNNCTG 1 cut(s) 1313
CciI TCATGA 1 cut(s) 861
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 1112, 1633
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 6 cut(s) 862, 904, 1481, 1600, 1690, 1934
CviQI GTAC 2 cut(s) 1112, 1633
DraI TTTAAA 2 cut(s) 1246, 1696
EaeI YGGCCR 3 cut(s) 205, 640, 1500
Eam1104I CTCTTC 2 cut(s) 915, 1809
EarI CTCTTC 2 cut(s) 915, 1809
Eco32I GATATC 2 cut(s) 993, 1927
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 1460, 1583
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 1502
EcoRV GATATC 2 cut(s) 993, 1927
EcoT22I ATGCAT 2 cut(s) 1735, 1826
FaeI CATG 6 cut(s) 865, 907, 1484, 1603, 1693, 1937
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FatI CATG 6 cut(s) 861, 903, 1480, 1599, 1689, 1933
FauI CCCGC 1 cut(s) 128
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 4 cut(s) 170, 173, 1584, 1709
FokI GGATG 3 cut(s) 178, 205, 1284
Fsp4HI GCNGC 4 cut(s) 170, 173, 1584, 1709
FspBI CTAG 6 cut(s) 323, 461, 519, 914, 1809, 1911
GluI GCNGC 4 cut(s) 170, 173, 1584, 1709
GsuI CTGGAG 1 cut(s) 1304
HaeIII GGCC 5 cut(s) 207, 642, 938, 1382, 1502
HapII CCGG 3 cut(s) 806, 1020, 1186
Hin1II CATG 6 cut(s) 865, 907, 1484, 1603, 1693, 1937
HindIII AAGCTT 5 cut(s) 61, 773, 960, 1144, 1518
HinfI GANTC 7 cut(s) 139, 235, 351, 1081, 1189, 1279, 1904
HpaII CCGG 3 cut(s) 806, 1020, 1186
HphI GGTGA 5 cut(s) 957, 1340, 1397, 1499, 1899
Hpy166II GTNNAC 6 cut(s) 679, 1072, 1429, 1633, 1665, 1987
Hpy8I GTNNAC 6 cut(s) 679, 1072, 1429, 1633, 1665, 1987
HpyCH4III ACNGT 4 cut(s) 748, 1433, 1573, 1953
HpyF10VI GCNNNNNNNGC 1 cut(s) 1605
Hsp92II CATG 6 cut(s) 865, 907, 1484, 1603, 1693, 1937
Ksp22I TGATCA 1 cut(s) 900
LmnI GCTCC 1 cut(s) 1716
Lsp1109I GCAGC 3 cut(s) 156, 1570, 1720
LweI GCATC 2 cut(s) 156, 1123
MaeI CTAG 6 cut(s) 323, 461, 519, 914, 1809, 1911
MaeIII GTNAC 7 cut(s) 27, 155, 554, 748, 1328, 1612, 1947
MfeI CAATTG 2 cut(s) 239, 800
MflI RGATCY 6 cut(s) 472, 590, 616, 1338, 1529, 1976
MlsI TGGCCA 3 cut(s) 207, 642, 1502
MluNI TGGCCA 3 cut(s) 207, 642, 1502
MlyI GAGTC 2 cut(s) 244, 1288
MmeI TCCRAC 2 cut(s) 30, 424
Mox20I TGGCCA 3 cut(s) 207, 642, 1502
Mph1103I ATGCAT 2 cut(s) 1735, 1826
MroXI GAANNNNTTC 3 cut(s) 125, 540, 657
MscI TGGCCA 3 cut(s) 207, 642, 1502
MslI CAYNNNNRTG 3 cut(s) 1376, 1410, 1485
Msp20I TGGCCA 3 cut(s) 207, 642, 1502
MspA1I CMGCKG 1 cut(s) 1154
MspI CCGG 3 cut(s) 806, 1020, 1186
MspR9I CCNGG 1 cut(s) 1504
MunI CAATTG 2 cut(s) 239, 800
Mva1269I GAATGC 1 cut(s) 1735
MvaI CCWGG 1 cut(s) 1504
MwoI GCNNNNNNNGC 1 cut(s) 1605
NlaIII CATG 6 cut(s) 865, 907, 1484, 1603, 1693, 1937
NlaIV GGNNCC 5 cut(s) 302, 427, 571, 1184, 1340
NmuCI GTSAC 4 cut(s) 27, 748, 1328, 1612
NsiI ATGCAT 2 cut(s) 1735, 1826
NspI RCATGY 2 cut(s) 1484, 1693
OliI CACNNNNGTG 1 cut(s) 1410
PagI TCATGA 1 cut(s) 861
PciI ACATGT 2 cut(s) 1480, 1689
PctI GAATGC 1 cut(s) 1735
PdmI GAANNNNTTC 3 cut(s) 125, 540, 657
PfeI GAWTC 5 cut(s) 139, 351, 1081, 1189, 1904
PflMI CCANNNNNTGG 1 cut(s) 1595
PkrI GCNGC 4 cut(s) 171, 174, 1585, 1710
PleI GAGTC 2 cut(s) 243, 1287
PpsI GAGTC 2 cut(s) 243, 1287
PpuMI RGGWCCY 1 cut(s) 278
PscI ACATGT 2 cut(s) 1480, 1689
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 1502
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 1502
PspN4I GGNNCC 5 cut(s) 302, 427, 571, 1184, 1340
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 1048, 1080
PstI CTGCAG 1 cut(s) 1710
PstNI CAGNNNCTG 1 cut(s) 1313
PsuI RGATCY 6 cut(s) 472, 590, 616, 1338, 1529, 1976
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 2 cut(s) 1113, 1634
RsaNI GTAC 2 cut(s) 1112, 1633
RseI CAYNNNNRTG 3 cut(s) 1376, 1410, 1485
SatI GCNGC 4 cut(s) 170, 173, 1584, 1709
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 244, 1288
ScrFI CCNGG 1 cut(s) 1504
SfaNI GCATC 2 cut(s) 156, 1123
SfcI CTRYAG 2 cut(s) 954, 1706
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 3 cut(s) 1376, 1410, 1485
SmlI CTYRAG 5 cut(s) 595, 846, 1168, 1216, 1333
SmoI CTYRAG 5 cut(s) 595, 846, 1168, 1216, 1333
SpeI ACTAGT 1 cut(s) 1808
SsiI CCGC 2 cut(s) 135, 172
SspI AATATT 1 cut(s) 78
SspMI CTAG 6 cut(s) 323, 461, 519, 914, 1809, 1911
StyD4I CCNGG 1 cut(s) 1502
TaaI ACNGT 4 cut(s) 748, 1433, 1573, 1953
TaqI TCGA 1 cut(s) 1461
TatI WGTACW 1 cut(s) 1632
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 5 cut(s) 139, 351, 1081, 1189, 1904
TscAI CASTG 6 cut(s) 36, 136, 820, 1436, 1687, 1905
TseFI GTSAC 4 cut(s) 27, 748, 1328, 1612
TseI GCWGC 3 cut(s) 169, 1583, 1708
Tsp45I GTSAC 4 cut(s) 27, 748, 1328, 1612
TspDTI ATGAA 6 cut(s) 570, 850, 1014, 1104, 1391, 1498
TspGWI ACGGA 1 cut(s) 1716
TspRI CASTG 6 cut(s) 36, 136, 820, 1436, 1687, 1905
Van91I CCANNNNNTGG 1 cut(s) 1595
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 7 cut(s) 210, 501, 645, 653, 794, 857, 1157
XceI RCATGY 2 cut(s) 1484, 1693
XmiI GTMKAC 1 cut(s) 1071
XmnI GAANNNNTTC 3 cut(s) 125, 540, 657
XspI CTAG 6 cut(s) 323, 461, 519, 914, 1809, 1911
Zsp2I ATGCAT 2 cut(s) 1735, 1826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.