Rroxscaffold_6G00393240
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001994
Physical Location & Seq
Forward (+)
13133142 .. 13134215
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393240.1

Sequence Viewer

Length: 399 bp
ATGAGCTCGGCCGACGGAGCCGGCGGCTACGGTGGTGGTGAAGAAGGAGGAGGTTCGTGCACCATCATCGGGAGATCGAAATCCCCGCCGTGGCCGCCGAGAGTACGGAAGGACCGCGAGGAGTGGAGCGACGGCGCGATCGCTTGCCTTCTCGATGCTTACATGGACAAGCTCACGCACCGAATTGGGGAAATCCGAGAGGCCGGATTGGGAGGAGGTGGCCGTGATCGTGAGCCGATGTCCGAGGCAAACCAAGAGCGTCGAGCGTTGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTGGGGGTTTGGGCGGTGGGGTCGGAGCGAGGGTCATAGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

132

Amino Acids

13.61

Weight (kDa)

5.06

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 117, 137
AciI CCGC 8 cut(s) 24, 86, 95, 115, 287, 315, 333, 371
AcoI YGGCCR 4 cut(s) 9, 92, 220, 384
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 69, 90, 187
AluBI AGCT 2 cut(s) 6, 172
AluI AGCT 2 cut(s) 6, 172
Alw21I GWGCWC 2 cut(s) 8, 62
Alw44I GTGCAC 1 cut(s) 58
AoxI GGCC 5 cut(s) 9, 92, 201, 220, 384
ApaLI GTGCAC 1 cut(s) 58
AsiSI GCGATCGC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 8, 62
BccI CCATC 3 cut(s) 71, 299, 361
BceAI ACGGC 3 cut(s) 73, 148, 207
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BisI GCNGC 3 cut(s) 25, 95, 372
BlsI GCNGC 3 cut(s) 26, 96, 373
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 79
BsaJI CCNNGG 3 cut(s) 89, 243, 387
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 90, 187
Bse118I RCCGGY 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 89, 243, 387
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 69, 90, 187
BseRI GAGGAG 3 cut(s) 63, 134, 228
BseSI GKGCMC 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 9
Bsh1236I CGCG 2 cut(s) 117, 137
Bsh1285I CGRYCG 3 cut(s) 12, 141, 291
BshFI GGCC 5 cut(s) 11, 94, 203, 222, 386
BsiEI CGRYCG 3 cut(s) 12, 141, 291
BsiHKAI GWGCWC 2 cut(s) 8, 62
BsiSI CCGG 2 cut(s) 21, 204
BslI CCNNNNNNNGG 3 cut(s) 69, 90, 187
BsnI GGCC 5 cut(s) 11, 94, 203, 222, 386
Bsp1286I GDGCHC 2 cut(s) 8, 62
Bsp143I GATC 3 cut(s) 74, 138, 226
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 8 cut(s) 24, 86, 95, 115, 287, 315, 333, 371
BspANI GGCC 5 cut(s) 11, 94, 203, 222, 386
BspFNI CGCG 2 cut(s) 117, 137
BspLI GGNNCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 89, 243, 387
BssMI GATC 3 cut(s) 74, 138, 226
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 22, 145
BstDSI CCRYGG 2 cut(s) 89, 387
BstFNI CGCG 2 cut(s) 117, 137
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 77, 141, 229
BstMBI GATC 3 cut(s) 74, 138, 226
BstMCI CGRYCG 3 cut(s) 12, 141, 291
BstMWI GCNNNNNNNGC 4 cut(s) 17, 94, 299, 371
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 2 cut(s) 117, 137
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 5 cut(s) 11, 94, 203, 222, 386
BtgI CCRYGG 2 cut(s) 89, 387
BtgZI GCGATG 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 22, 145
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 163, 388
CviQI GTAC 1 cut(s) 104
DpnI GATC 3 cut(s) 76, 140, 228
DpnII GATC 3 cut(s) 74, 138, 226
EaeI YGGCCR 4 cut(s) 9, 92, 220, 384
EagI CGGCCG 1 cut(s) 9
EciI GGCGGA 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 2 cut(s) 166, 391
FaiI YATR 4 cut(s) 164, 356, 380, 389
FatI CATG 2 cut(s) 162, 387
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 25, 95, 372
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 25, 95, 372
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 25, 95, 372
HaeIII GGCC 5 cut(s) 11, 94, 203, 222, 386
HapII CCGG 2 cut(s) 21, 204
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 166, 391
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HpaII CCGG 2 cut(s) 21, 204
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 197, 244, 344
Hpy188III TCNNGA 3 cut(s) 70, 152, 230
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 3 cut(s) 17, 134, 264
HpyAV CCTTC 3 cut(s) 38, 103, 158
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 94, 299, 371
Hsp92II CATG 2 cut(s) 166, 391
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 74, 138, 226
LmnI GCTCC 3 cut(s) 17, 126, 344
LpnPI CCDG 2 cut(s) 34, 217
LweI GCATC 1 cut(s) 145
MalI GATC 3 cut(s) 76, 140, 228
MboI GATC 3 cut(s) 74, 138, 226
MboII GAAGA 1 cut(s) 53
MfeI CAATTG 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 8, 62
MluCI AATT 2 cut(s) 183, 275
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 8 cut(s) 41, 44, 112, 193, 206, 209, 238, 342
MroNI GCCGGC 1 cut(s) 20
MspI CCGG 2 cut(s) 21, 204
MunI CAATTG 1 cut(s) 275
MvnI CGCG 2 cut(s) 117, 137
MwoI GCNNNNNNNGC 4 cut(s) 17, 94, 299, 371
NaeI GCCGGC 1 cut(s) 22
NcoI CCATGG 1 cut(s) 387
NdeII GATC 3 cut(s) 74, 138, 226
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 166, 391
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 26, 96, 373
Ple19I CGATCG 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 112
PvuI CGATCG 1 cut(s) 141
RgaI GCGATCGC 1 cut(s) 141
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 3 cut(s) 25, 95, 372
Sau3AI GATC 3 cut(s) 74, 138, 226
Sau96I GGNCC 1 cut(s) 112
SduI GDGCHC 2 cut(s) 8, 62
SetI ASST 4 cut(s) 8, 55, 174, 220
SfaAI GCGATCGC 1 cut(s) 141
SfaNI GCATC 1 cut(s) 145
SgfI GCGATCGC 1 cut(s) 141
SinI GGWCC 1 cut(s) 112
Sse9I AATT 2 cut(s) 183, 275
SsiI CCGC 8 cut(s) 24, 86, 95, 115, 287, 315, 333, 371
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 77, 153, 262
TasI AATT 2 cut(s) 183, 275
TauI GCSGC 3 cut(s) 27, 97, 374
TspGWI ACGGA 2 cut(s) 30, 121
VneI GTGCAC 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.