RLG00000024278
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001994
Physical Location & Seq
Forward (+)
34005278 .. 34006382
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024278

Sequence Viewer

Length: 636 bp
ATGAGCTCAGCGACGGAGCCGGCGGCGGCGGTGGTGGCGAAGGAGGAGGAGGAGGTTCTTACACCATCATCAGGAGATCGAAATCCTCGGCCGTGGCCGCAGGAGAGTACCGGAAGGATCGCGAGGAGTGGAGCGACGGCGCGATCGCTTGCCTTCTCGATGCATACATGGACAAAAGAGGTACAAGCTCGAGAGGCACAGGATGACCAATTCTGGAAATTCGCCGAGTCATTGGCCTTGGTTCAAGATAATGGAGTAGATCGTCGGCGCAATTCGCTTCCGGCGAAGGCCACCTCTGATTATGACAGAGGCATTACTTCCTCCGGTGCCACGCCTCAGAAATCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATACATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGTTCAAAATAACAATGCTAATTGCGAGAGAAGTTGCAATGGCCTGCCATGGTGGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTGGGGTTTTGGGCGGTGGGGTCAAAGCGGAGGGTCATGGAGATTGCGATGGCAGCGAGTATGACAGCCATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

9.64

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccII CGCG 2 cut(s) 122, 142
AciI CCGC 8 cut(s) 23, 26, 29, 98, 523, 551, 569, 583
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 89, 95
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 2 cut(s) 109, 183
AfiI CCNNNNNNNGG 2 cut(s) 71, 497
AgsI TTSAA 3 cut(s) 245, 433, 449
AhlI ACTAGT 1 cut(s) 368
AluBI AGCT 2 cut(s) 6, 188
AluI AGCT 2 cut(s) 6, 188
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 5 cut(s) 89, 95, 234, 288, 484
ApeKI GCWGC 2 cut(s) 394, 608
ApoI RAATTY 1 cut(s) 218
AsiSI GCGATCGC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 142, 270
AvaI CYCGRG 1 cut(s) 189
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 406, 620
BccI CCATC 3 cut(s) 73, 535, 598
BceAI ACGGC 2 cut(s) 76, 153
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 1 cut(s) 369
BisI GCNGC 5 cut(s) 24, 27, 98, 395, 609
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 5 cut(s) 25, 28, 99, 396, 610
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 18, 328
BmsI GCATC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 5 cut(s) 86, 92, 237, 491, 624
BsaWI WCCGGW 2 cut(s) 110, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 497
Bse118I RCCGGY 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 5 cut(s) 86, 92, 237, 491, 624
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 71, 497
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 3 cut(s) 21, 350, 395
BseRI GAGGAG 4 cut(s) 59, 62, 65, 139
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 406, 620
Bsh1236I CGCG 2 cut(s) 122, 142
Bsh1285I CGRYCG 3 cut(s) 92, 146, 527
BshFI GGCC 5 cut(s) 91, 97, 236, 290, 486
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 3 cut(s) 92, 146, 527
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 4 cut(s) 20, 111, 281, 324
BslI CCNNNNNNNGG 2 cut(s) 71, 497
BsnI GGCC 5 cut(s) 91, 97, 236, 290, 486
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 76, 117, 143, 259
Bsp1720I GCTNAGC 1 cut(s) 7
Bsp19I CCATGG 2 cut(s) 491, 624
Bsp68I TCGCGA 1 cut(s) 122
BspACI CCGC 8 cut(s) 23, 26, 29, 98, 523, 551, 569, 583
BspANI GGCC 5 cut(s) 91, 97, 236, 290, 486
BspCNI CTCAG 3 cut(s) 20, 349, 394
BspFNI CGCG 2 cut(s) 122, 142
BspLI GGNNCC 2 cut(s) 18, 328
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 5 cut(s) 86, 92, 237, 491, 624
BssMI GATC 4 cut(s) 76, 117, 143, 259
BssT1I CCWWGG 3 cut(s) 237, 491, 624
Bst6I CTCTTC 1 cut(s) 415
BstC8I GCNNGC 3 cut(s) 21, 150, 488
BstDEI CTNAG 3 cut(s) 7, 336, 381
BstDSI CCRYGG 3 cut(s) 92, 491, 624
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 122, 142
BstHHI GCGC 2 cut(s) 142, 270
BstKTI GATC 4 cut(s) 79, 120, 146, 262
BstMBI GATC 4 cut(s) 76, 117, 143, 259
BstMCI CGRYCG 3 cut(s) 92, 146, 527
BstMWI GCNNNNNNNGC 6 cut(s) 35, 97, 194, 274, 535, 608
BstUI CGCG 2 cut(s) 122, 142
BstV1I GCAGC 2 cut(s) 406, 620
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 5 cut(s) 91, 97, 236, 290, 486
BtgI CCRYGG 3 cut(s) 92, 491, 624
BtgZI GCGATG 1 cut(s) 617
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 445
BtuMI TCGCGA 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 21, 150, 488
CfoI GCGC 2 cut(s) 142, 270
Cfr10I RCCGGY 1 cut(s) 19
Csp6I GTAC 2 cut(s) 108, 182
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 4 cut(s) 168, 492, 592, 625
CviQI GTAC 2 cut(s) 108, 182
DdeI CTNAG 3 cut(s) 7, 336, 381
DpnI GATC 4 cut(s) 78, 119, 145, 261
DpnII GATC 4 cut(s) 76, 117, 143, 259
EaeI YGGCCR 2 cut(s) 89, 95
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 237, 491, 624
Eco24I GRGCYC 1 cut(s) 8
Eco52I CGGCCG 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 237, 491, 624
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 237, 491, 624
FaeI CATG 4 cut(s) 171, 495, 595, 628
FaiI YATR 8 cut(s) 165, 169, 303, 390, 493, 593, 617, 626
FatI CATG 4 cut(s) 167, 491, 591, 624
Fnu4HI GCNGC 5 cut(s) 24, 27, 98, 395, 609
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 24, 27, 98, 395, 609
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 141, 269
GluI GCNGC 5 cut(s) 24, 27, 98, 395, 609
HaeIII GGCC 5 cut(s) 91, 97, 236, 290, 486
HapII CCGG 4 cut(s) 20, 111, 281, 324
HhaI GCGC 2 cut(s) 142, 270
Hin1II CATG 4 cut(s) 171, 495, 595, 628
Hin6I GCGC 2 cut(s) 140, 268
HinP1I GCGC 2 cut(s) 140, 268
HinfI GANTC 1 cut(s) 227
HpaII CCGG 4 cut(s) 20, 111, 281, 324
Hpy188I TCNGA 3 cut(s) 298, 339, 384
Hpy188III TCNNGA 6 cut(s) 72, 121, 157, 191, 214, 245
Hpy99I CGWCG 3 cut(s) 16, 139, 267
HpyAV CCTTC 4 cut(s) 34, 108, 163, 280
HpyCH4V TGCA 4 cut(s) 163, 356, 362, 480
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 97, 194, 274, 535, 608
HpyF3I CTNAG 3 cut(s) 7, 336, 381
Hsp92II CATG 4 cut(s) 171, 495, 595, 628
HspAI GCGC 2 cut(s) 140, 268
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 4 cut(s) 76, 117, 143, 259
LmnI GCTCC 2 cut(s) 16, 131
Lsp1109I GCAGC 2 cut(s) 406, 620
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 78, 119, 145, 261
MboI GATC 4 cut(s) 76, 117, 143, 259
MboII GAAGA 1 cut(s) 432
MfeI CAATTG 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 209, 218, 271, 363, 402, 463, 511
MlyI GAGTC 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 19
MseI TTAA 1 cut(s) 411
MspI CCGG 4 cut(s) 20, 111, 281, 324
MunI CAATTG 1 cut(s) 511
MvnI CGCG 2 cut(s) 122, 142
MwoI GCNNNNNNNGC 6 cut(s) 35, 97, 194, 274, 535, 608
NaeI GCCGGC 1 cut(s) 21
NcoI CCATGG 2 cut(s) 491, 624
NdeII GATC 4 cut(s) 76, 117, 143, 259
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 4 cut(s) 171, 495, 595, 628
NlaIV GGNNCC 2 cut(s) 18, 328
NmeAIII GCCGAG 2 cut(s) 67, 250
NruI TCGCGA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PdiI GCCGGC 1 cut(s) 21
PkrI GCNGC 5 cut(s) 25, 28, 99, 396, 610
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 18, 328
PvuI CGATCG 1 cut(s) 146
RgaI GCGATCGC 1 cut(s) 146
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 2 cut(s) 109, 183
RsaNI GTAC 2 cut(s) 108, 182
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 5 cut(s) 24, 27, 98, 395, 609
Sau3AI GATC 4 cut(s) 76, 117, 143, 259
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 8, 57, 183, 190, 296, 508
SfaAI GCGATCGC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 189
SgfI GCGATCGC 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 7 cut(s) 209, 218, 271, 363, 402, 463, 511
SsiI CCGC 8 cut(s) 23, 26, 29, 98, 523, 551, 569, 583
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 3 cut(s) 237, 491, 624
TaqI TCGA 3 cut(s) 79, 158, 190
TasI AATT 7 cut(s) 209, 218, 271, 363, 402, 463, 511
TauI GCSGC 3 cut(s) 26, 29, 100
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 445
TseI GCWGC 2 cut(s) 394, 608
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 189
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.