Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

26154853 .. 26158674

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1168400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAAGCTCTGGAATTTCCTTCTCTCAACACCCACAGCATTTGGTACTCCAGTTCTCAGAAAGGAAAAGCCACCAAATCACCATGTCAAAGAACACATTTTTCAAGCATTTCACCTTCCTCTTCCCTAAAACTCACACCCTCTTACAGAAGTTACCATTTTAGGAGTGCCACTCGGATGCAGGGTGACAGTGAAGATTACGAGGAAGGAAAGATTAAAGCTTTAACACCAAAGGAAGCCGGGTATGCGATTCAGCTATCTAACAAAACCCTTCTCGATGTTCGCCCCTCTACAGAACACAAAAAGGCATGGGTTAAAGGCTCAATCTGGATTCGATTAATTGATGTTGGTAACAAATTCGATGCTGGAACTCTTACCAGAAAGTTTATGAGTTCACAATGGGGAAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

9.83

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	14, 356
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	3 cut(s)	8, 221, 256
AluI	AGCT	3 cut(s)	8, 221, 256
ApoI	RAATTY	2 cut(s)	14, 356
AseI	ATTAAT	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	72, 105, 197
BaeI	ACNNNNGTAYC	2 cut(s)	37, 70
BcnI	CCSGG	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	168, 352
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	23, 58
CviAII	CATG	2 cut(s)	84, 309
CviJI	RGCY	6 cut(s)	8, 71, 221, 239, 256, 321
CviKI_1	RGCY	6 cut(s)	8, 71, 221, 239, 256, 321
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	87, 312
FaiI	YATR	4 cut(s)	85, 246, 310, 389
FatI	CATG	2 cut(s)	83, 308
FokI	GGATG	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	34
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	2 cut(s)	87, 312
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	250, 331
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	72, 105, 197
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	60, 177
Hpy188III	TCNNGA	3 cut(s)	11, 275, 328
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	4 cut(s)	30, 126, 200, 281
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	87, 312
LpnPI	CCDG	6 cut(s)	64, 167, 253, 313, 351, 391
LweI	GCATC	2 cut(s)	168, 352
MaeIII	GTNAC	3 cut(s)	152, 185, 350
MboII	GAAGA	2 cut(s)	114, 206
MluCI	AATT	3 cut(s)	14, 339, 356
MnlI	CCTC	4 cut(s)	130, 151, 196, 298
MseI	TTAA	4 cut(s)	216, 224, 315, 338
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	241
NlaIII	CATG	2 cut(s)	87, 312
NmuCI	GTSAC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	250, 331
PshBI	ATTAAT	1 cut(s)	338
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	216, 224, 315, 338
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	4 cut(s)	10, 118, 223, 258
SfaNI	GCATC	2 cut(s)	168, 352
SfcI	CTRYAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	14, 339, 356
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	276, 334, 360
TasI	AATT	3 cut(s)	14, 339, 356
TfiI	GAWTC	2 cut(s)	250, 331
Tru1I	TTAA	4 cut(s)	216, 224, 315, 338
Tru9I	TTAA	4 cut(s)	216, 224, 315, 338
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	2 cut(s)	14, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.