Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

14268133 .. 14271668

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G163400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAGCTCTGGGATTTCCTTCTCTCAACACCCACACCATTTCGTGCTCTAGTTTTCAGAAACAAAGAACGACCAAAATACCATGTCAAAGAGAACGCTTTTCAAGCATTTCACTTTTATCTTCGCTAAAACTTAGACCCTGTTACAGACCATTCCATTTTCGTAGGAGTGCTACTCGAATGCAAGCTGACAATGAAGATTACGAGTTGAAGCAAATGAGGGATGTGGCTGCTGCCAAGAAGAGATGGGAAGCTCTGGTTAGGGAAGGAAAGGTTAAAGCTTTAACACCAAGGGAAGCTGGGTATGCAATTCAGCTATCTAACAAAACCCTTCTTGATGTTCGTCCCTCTACAGAACACAAAAAGGCATGGGTTAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTAACGAATTCGACGCTGGAACTCTTTCCAGAAAGTTCATGAGTTTCACGATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGTCTTATAATAGCCAGTTCTTGTCCAAAGTTGATGAGAAGTTTCCAAAAGATACAGATCTTATTGTTGCATGTCAGAAGGGATTGAGATCTCTAGCTGCTTGTGAGCAGCTGTACAATGCGGGATACAGAAACCTTTTCTGGGTTCAAGGGGGTTTAGAGGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGCCCTCAGCCATTTAAGTTTGCTGGAATTGGTGGGGTTTCAGAATTCCTTGGAAAGTGCATTTATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

9.27

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	416, 725
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	3 cut(s)	105, 211, 638
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	8 cut(s)	8, 188, 254, 281, 299, 316, 587, 601
AluI	AGCT	8 cut(s)	8, 188, 254, 281, 299, 316, 587, 601
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	5 cut(s)	230, 233, 587, 598, 653
ApoI	RAATTY	2 cut(s)	416, 725
Asp700I	GAANNNNTTC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	5 cut(s)	217, 220, 574, 610, 640
BccI	CCATC	2 cut(s)	240, 454
BciT130I	CCWGG	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	608
BfaI	CTAG	2 cut(s)	51, 584
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	608
BglII	AGATCT	2 cut(s)	547, 578
BisI	GCNGC	5 cut(s)	231, 234, 588, 599, 654
BlsI	GCNGC	5 cut(s)	232, 235, 589, 600, 655
Bme1390I	CCNGG	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	388
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu10I	CCTNAGC	1 cut(s)	687
BsaBI	GATNNNNATC	2 cut(s)	546, 577
BsaJI	CCNNGG	2 cut(s)	290, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	505
Bse8I	GATNNNNATC	2 cut(s)	546, 577
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	290, 730
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	2 cut(s)	546, 577
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	5 cut(s)	217, 220, 574, 610, 640
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	547, 578, 667
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	447
BspPI	GGATC	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	290, 730
BssMI	GATC	3 cut(s)	547, 578, 667
BssT1I	CCWWGG	2 cut(s)	290, 730
Bst2UI	CCWGG	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	236, 657
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	134, 687
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	550, 581, 670
BstMBI	GATC	3 cut(s)	547, 578, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 305
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	5 cut(s)	217, 220, 574, 610, 640
BstX2I	RGATCY	3 cut(s)	547, 578, 667
BstYI	RGATCY	3 cut(s)	547, 578, 667
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	4 cut(s)	84, 369, 448, 561
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	2 cut(s)	134, 687
DpnI	GATC	3 cut(s)	549, 580, 669
DpnII	GATC	3 cut(s)	547, 578, 667
Eam1104I	CTCTTC	2 cut(s)	236, 657
EarI	CTCTTC	2 cut(s)	236, 657
Eco130I	CCWWGG	2 cut(s)	290, 730
Eco57I	CTGAAG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRI	GAATTC	2 cut(s)	416, 725
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	290, 730
ErhI	CCWWGG	2 cut(s)	290, 730
FaeI	CATG	4 cut(s)	87, 372, 451, 564
FaiI	YATR	7 cut(s)	85, 306, 370, 449, 498, 562, 751
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	83, 368, 447, 560
FauI	CCCGC	1 cut(s)	604
Fnu4HI	GCNGC	5 cut(s)	231, 234, 588, 599, 654
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	5 cut(s)	231, 234, 588, 599, 654
FspBI	CTAG	2 cut(s)	51, 584
GluI	GCNGC	5 cut(s)	231, 234, 588, 599, 654
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	684
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	87, 372, 451, 564
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	391
Hpy188I	TCNGA	4 cut(s)	60, 567, 677, 724
Hpy188III	TCNNGA	4 cut(s)	335, 438, 448, 457
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	5 cut(s)	30, 260, 341, 562, 674
HpyCH4V	TGCA	4 cut(s)	184, 308, 560, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 305
HpyF3I	CTNAG	2 cut(s)	134, 687
Hsp92II	CATG	4 cut(s)	87, 372, 451, 564
Kzo9I	GATC	3 cut(s)	547, 578, 667
Lsp1109I	GCAGC	5 cut(s)	217, 220, 574, 610, 640
MaeI	CTAG	2 cut(s)	51, 584
MaeIII	GTNAC	2 cut(s)	143, 410
MalI	GATC	3 cut(s)	549, 580, 669
MboI	GATC	3 cut(s)	547, 578, 667
MboII	GAAGA	5 cut(s)	114, 209, 253, 671, 674
MflI	RGATCY	3 cut(s)	547, 578, 667
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	4 cut(s)	309, 416, 708, 725
MnlI	CCTC	5 cut(s)	213, 358, 643, 658, 696
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	4 cut(s)	276, 284, 375, 696
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	105, 305
NdeII	GATC	3 cut(s)	547, 578, 667
NlaIII	CATG	4 cut(s)	87, 372, 451, 564
NspI	RCATGY	1 cut(s)	564
PagI	TCATGA	1 cut(s)	447
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	232, 235, 589, 600, 655
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	683
PsuI	RGATCY	3 cut(s)	547, 578, 667
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
SaqAI	TTAA	4 cut(s)	276, 284, 375, 696
SatI	GCNGC	5 cut(s)	231, 234, 588, 599, 654
Sau3AI	GATC	3 cut(s)	547, 578, 667
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	309, 416, 708, 725
SsiI	CCGC	1 cut(s)	611
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	51, 584
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	2 cut(s)	290, 730
TaqI	TCGA	2 cut(s)	178, 420
TasI	AATT	4 cut(s)	309, 416, 708, 725
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	4 cut(s)	276, 284, 375, 696
Tru9I	TTAA	4 cut(s)	276, 284, 375, 696
TseI	GCWGC	5 cut(s)	230, 233, 587, 598, 653
TspDTI	ATGAA	2 cut(s)	210, 436
XapI	RAATTY	2 cut(s)	416, 725
XceI	RCATGY	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	2 cut(s)	51, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.