Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

40130774 .. 40140027

Gene Structure 9254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG223100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGTAATCCTTATTGCTTTTTGCAGATTTTCAGCAGCATTATTCCAAAAGGAGTGCGGAAAACCAAAATTGCAAAGAAGCTAAGCAAAATGTTGGTGAATCATCTTGGGCTAACATTGACTAAAGAAGACCTGCAGAGTGTGGTTGATCTAATGGAGCCATATGGTCAGATAAGCAATGGAATAGAACTACTAAACCCTCCTCTTGAGTGGACGAGGCAGACCAAGTTCCCTCATGTTGTCTGGGCCGCAGGTCGCGGTCTCATTGCCCTTTTGTTGCCAAACTTTGATGTTGTAGACAATATATGGCTGGAGCAATTGTCTTGGCAGATAGCTACACAGATGGTCATTCTGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGCAATGCGGGACTTGTGGCAAGAATATTGAGCTTGAGAATCGGTTTAGAAATTCTAAATTTCATTTTTCTCAGGCAAGAAGAAAAGCTCACTACCCTTATCCTATCATATGCATATAAAGACGCAGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

176

Amino Acids

20.0

Weight (kDa)

6.83

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	141, 242
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	258
AciI	CCGC	4 cut(s)	58, 249, 258, 404
AcsI	RAATTY	3 cut(s)	447, 454, 525
AluBI	AGCT	4 cut(s)	82, 335, 429, 484
AluI	AGCT	4 cut(s)	82, 335, 429, 484
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	3 cut(s)	447, 454, 525
AspS9I	GGNCC	2 cut(s)	246, 365
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	2 cut(s)	141, 242
BisI	GCNGC	2 cut(s)	37, 249
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	2 cut(s)	38, 250
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	246, 365
BmiI	GGNNCC	2 cut(s)	159, 366
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	227, 451
BsaI	GGTCTC	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse3DI	GCAATG	3 cut(s)	184, 264, 406
BseMI	GCAATG	3 cut(s)	184, 264, 406
BseMII	CTCAG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	248
BslFI	GGGAC	2 cut(s)	378, 420
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	378, 420
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	4 cut(s)	58, 249, 258, 404
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	159, 366
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	2 cut(s)	141, 242
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	3 cut(s)	184, 264, 406
BssMI	GATC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	83, 467
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	248
BveI	ACCTGC	2 cut(s)	141, 242
Cfr13I	GGNCC	2 cut(s)	246, 365
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	8 cut(s)	82, 112, 160, 248, 310, 335, 429, 484
CviKI_1	RGCY	8 cut(s)	82, 112, 160, 248, 310, 335, 429, 484
DdeI	CTNAG	2 cut(s)	83, 467
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	1 cut(s)	239
FaqI	GGGAC	2 cut(s)	378, 420
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	397
FauNDI	CATATG	2 cut(s)	163, 505
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	37, 249
Fsp4HI	GCNGC	2 cut(s)	37, 249
GluI	GCNGC	2 cut(s)	37, 249
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	2 cut(s)	100, 435
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	213, 298
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	213, 298
HpyCH4V	TGCA	5 cut(s)	25, 74, 136, 383, 509
HpyF3I	CTNAG	2 cut(s)	83, 467
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	157, 313
LpnPI	CCDG	7 cut(s)	146, 229, 237, 296, 381, 393, 454
Lsp1109I	GCAGC	1 cut(s)	48
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	140, 488
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	5 cut(s)	69, 317, 447, 454, 525
MnlI	CCTC	4 cut(s)	210, 210, 213, 243
Mph1103I	ATGCAT	1 cut(s)	511
MslI	CAYNNNNRTG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	258
NdeI	CATATG	2 cut(s)	163, 505
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	159, 366
NsiI	ATGCAT	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	100, 435
PkrI	GCNGC	2 cut(s)	38, 250
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	159, 366
PspPI	GGNCC	2 cut(s)	246, 365
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	399
SatI	GCNGC	2 cut(s)	37, 249
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	246, 365
SetI	ASST	7 cut(s)	84, 135, 256, 337, 370, 431, 486
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	206, 430
SmoI	CTYRAG	2 cut(s)	206, 430
Sse9I	AATT	5 cut(s)	69, 317, 447, 454, 525
SsiI	CCGC	4 cut(s)	58, 249, 258, 404
SspI	AATATT	1 cut(s)	423
TasI	AATT	5 cut(s)	69, 317, 447, 454, 525
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	100, 435
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	3 cut(s)	447, 454, 525
XmiI	GTMKAC	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.