Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

208693 .. 211648

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggaagctctgggatttccttctctgaatactcacaccatttcgtgctctagttttcggcaacgaacacccaccaaattaccatatgaaacaaaccatttctcaagctcttcttcaaaaccaaaaggaccctcttacagaacccaccattttcgtaggagtgctacacgaatgcaagctgacaatgaagatttcgagttgaagcaaatgagagatatggctgctgccaagaaaagatgggatgctctgattagggacggaaaggttaaacctttaacaccaagggaagctgggtatgcaattcagctatctaacaaaacccttcttgatgttcgtccctctacagaacacaaaaaggcatgggtcaaaggctcaacctggattccaatatttgatgttggtgacgaattcgatgttggaactctttccagaaagattatgggattcactatggggggttggtggagtggtgtgcctacattggcgtataacaaccagttcttgtctaaggttgatgagaaatttccaaaggatactgatcttatcgttgcatgccagaggggattgagatctatagctgcttgtgaggtgctgtacaatgctggctacagaaaccttttctgggttcaggggggtttagaagctgctgaagaagaggatcttgtcagagaaggccctcagccatttaagtttgcaggaatcggtggggtttcggagttcctcggttggactgatcaacaaagagctgcagctgctaaagaagggtggggttaccgatttatgttctctgcccgtctggttggagtctttctgattgctgatgctttatttcttggttctcagcaactagttcattatcttcaggatataaggtcacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

293

Amino Acids

33.07

Weight (kDa)

9.15

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	666
AcsI	RAATTY	2 cut(s)	407, 521
AcuI	CTGAAG	2 cut(s)	669, 845
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	117, 202
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	9 cut(s)	8, 108, 179, 290, 307, 578, 644, 746, 752
AluI	AGCT	9 cut(s)	8, 108, 179, 290, 307, 578, 644, 746, 752
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	666
AoxI	GGCC	1 cut(s)	673
ApeKI	GCWGC	7 cut(s)	221, 224, 578, 644, 746, 749, 752
ApoI	RAATTY	2 cut(s)	407, 521
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	128, 674
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	7 cut(s)	208, 211, 565, 631, 733, 739, 761
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	733
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	2 cut(s)	51, 848
BfmI	CTRYAG	4 cut(s)	342, 573, 607, 747
BfuI	GTATCC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	7 cut(s)	222, 225, 579, 645, 747, 750, 753
BlsI	GCNGC	7 cut(s)	223, 226, 580, 646, 748, 751, 754
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 674
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	232, 811
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	88
BsaBI	GATNNNNATC	2 cut(s)	537, 568
BsaJI	CCNNGG	2 cut(s)	281, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	496
Bse8I	GATNNNNATC	2 cut(s)	537, 568
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	281, 721
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	2 cut(s)	537, 568
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	692, 854
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	7 cut(s)	208, 211, 565, 631, 733, 739, 761
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	269, 321
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmFI	GGGAC	2 cut(s)	269, 321
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	538, 569, 658, 733
BspANI	GGCC	1 cut(s)	675
BspCNI	CTCAG	2 cut(s)	691, 853
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	281, 721
BssMI	GATC	4 cut(s)	538, 569, 658, 733
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	115, 648
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	177, 553, 604
BstDEI	CTNAG	3 cut(s)	507, 678, 840
BstEII	GGTNACC	1 cut(s)	770
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	4 cut(s)	541, 572, 661, 736
BstMBI	GATC	4 cut(s)	538, 569, 658, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 752
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	555
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	4 cut(s)	342, 573, 607, 747
BstV1I	GCAGC	7 cut(s)	208, 211, 565, 631, 733, 739, 761
BstX2I	RGATCY	2 cut(s)	569, 658
BstYI	RGATCY	2 cut(s)	569, 658
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	877
Cac8I	GCNNGC	3 cut(s)	177, 553, 604
Cfr13I	GGNCC	2 cut(s)	128, 674
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	2 cut(s)	360, 552
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	3 cut(s)	507, 678, 840
DpnI	GATC	4 cut(s)	540, 571, 660, 735
DpnII	GATC	4 cut(s)	538, 569, 658, 733
Eam1104I	CTCTTC	2 cut(s)	115, 648
EarI	CTCTTC	2 cut(s)	115, 648
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	669, 845
Eco91I	GGTNACC	1 cut(s)	770
EcoO109I	RGGNCCY	2 cut(s)	128, 674
EcoO65I	GGTNACC	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	363, 555
FalI	AAGNNNNNCTT	4 cut(s)	97, 129, 645, 677
FaqI	GGGAC	2 cut(s)	269, 321
FatI	CATG	2 cut(s)	359, 551
FauNDI	CATATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	7 cut(s)	222, 225, 579, 645, 747, 750, 753
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	7 cut(s)	222, 225, 579, 645, 747, 750, 753
FspBI	CTAG	2 cut(s)	51, 848
GluI	GCNGC	7 cut(s)	222, 225, 579, 645, 747, 750, 753
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	675
Hin1II	CATG	2 cut(s)	363, 555
HinfI	GANTC	4 cut(s)	382, 444, 699, 804
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	5 cut(s)	27, 249, 668, 715, 813
Hpy188III	TCNNGA	3 cut(s)	326, 429, 863
HpyAV	CCTTC	4 cut(s)	30, 332, 665, 755
HpyCH4V	TGCA	5 cut(s)	175, 299, 551, 695, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 752
HpyF3I	CTNAG	3 cut(s)	507, 678, 840
Hsp92II	CATG	2 cut(s)	363, 555
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	4 cut(s)	538, 569, 658, 733
LguI	GCTCTTC	1 cut(s)	115
Lsp1109I	GCAGC	7 cut(s)	208, 211, 565, 631, 733, 739, 761
LweI	GCATC	2 cut(s)	232, 811
MaeI	CTAG	2 cut(s)	51, 848
MaeIII	GTNAC	3 cut(s)	401, 770, 873
MalI	GATC	4 cut(s)	540, 571, 660, 735
MboI	GATC	4 cut(s)	538, 569, 658, 733
MboII	GAAGA	6 cut(s)	102, 105, 200, 662, 665, 851
MflI	RGATCY	2 cut(s)	569, 658
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	4 cut(s)	77, 300, 407, 521
MlyI	GAGTC	1 cut(s)	813
MmeI	TCCRAC	3 cut(s)	397, 707, 781
MnlI	CCTC	7 cut(s)	142, 349, 552, 580, 649, 687, 731
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	267, 275, 687
MspA1I	CMGCKG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	296, 752
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	4 cut(s)	538, 569, 658, 733
NlaIII	CATG	2 cut(s)	363, 555
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	401, 873
NspI	RCATGY	1 cut(s)	555
PaeI	GCATGC	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	115
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	382, 444, 699
PkrI	GCNGC	7 cut(s)	223, 226, 580, 646, 748, 751, 754
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	2 cut(s)	128, 674
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	2 cut(s)	569, 658
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	267, 275, 687
SatI	GCNGC	7 cut(s)	222, 225, 579, 645, 747, 750, 753
Sau3AI	GATC	4 cut(s)	538, 569, 658, 733
Sau96I	GGNCC	2 cut(s)	128, 674
SchI	GAGTC	1 cut(s)	813
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	2 cut(s)	232, 811
SfcI	CTRYAG	4 cut(s)	342, 573, 607, 747
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	847
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	4 cut(s)	77, 300, 407, 521
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	2 cut(s)	51, 848
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	281
TaqI	TCGA	2 cut(s)	195, 411
TasI	AATT	4 cut(s)	77, 300, 407, 521
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	3 cut(s)	382, 444, 699
Tru1I	TTAA	3 cut(s)	267, 275, 687
Tru9I	TTAA	3 cut(s)	267, 275, 687
TseFI	GTSAC	2 cut(s)	401, 873
TseI	GCWGC	7 cut(s)	221, 224, 578, 644, 746, 749, 752
Tsp45I	GTSAC	2 cut(s)	401, 873
TspDTI	ATGAA	3 cut(s)	102, 201, 842
TspGWI	ACGGA	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	2 cut(s)	407, 521
XceI	RCATGY	1 cut(s)	555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	51, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.