Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Reverse (-)

58969454 .. 58970674

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATGACGATGAGAATCACCTACCCTATATATTACTCACCAATTTCATCACTGCGTCACATTTTATCGGCAGATCTATAGCTGCTTGTGAGGTGCTGTACAATGCTGGCTACAGAAACCTTTTCTGGGTTCAGGGGGGTTTAGAAGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGCCCTCAGCCATTTAAGTTTGCAGGAATCGGTGGGGTTTCAGAGTTCCTCGGTTGGACTGATCAACAAAGAGCTGCAGCTGCTAAAGAAGGGTGGGGTTACCGATTTATGTTCTCTGCCCGTCTGGTTGGAGTCTTTCTGATTGCTGATGCCTTATTTCTTGGTTCTCAGCAACTAGTTCATTATCTTCAGGATATAAGGTCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

4.89

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	174, 350
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	127
AhlI	ACTAGT	1 cut(s)	352
AluBI	AGCT	4 cut(s)	83, 149, 251, 257
AluI	AGCT	4 cut(s)	83, 149, 251, 257
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	5 cut(s)	83, 149, 251, 254, 257
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	11, 31
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	70, 136, 238, 244, 266
BclI	TGATCA	1 cut(s)	238
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	3 cut(s)	78, 112, 252
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	5 cut(s)	84, 150, 252, 255, 258
BlsI	GCNGC	5 cut(s)	85, 151, 253, 256, 259
BmgT120I	GGNCC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	197, 359
BseXI	GCAGC	5 cut(s)	70, 136, 238, 244, 266
BshFI	GGCC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	74, 163, 238
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	196, 358
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	74, 163, 238
Bst6I	CTCTTC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	183, 345
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	77, 166, 241
BstMBI	GATC	3 cut(s)	74, 163, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	275
BstSFI	CTRYAG	3 cut(s)	78, 112, 252
BstV1I	GCAGC	5 cut(s)	70, 136, 238, 244, 266
BstX2I	RGATCY	2 cut(s)	74, 163
BstYI	RGATCY	2 cut(s)	74, 163
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 382
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	7 cut(s)	83, 111, 149, 180, 187, 251, 257
CviKI_1	RGCY	7 cut(s)	83, 111, 149, 180, 187, 251, 257
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	183, 345
DpnI	GATC	3 cut(s)	76, 165, 240
DpnII	GATC	3 cut(s)	74, 163, 238
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	174, 350
Eco91I	GGTNACC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	275
FaiI	YATR	5 cut(s)	30, 32, 80, 287, 374
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	84, 150, 252, 255, 258
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	84, 150, 252, 255, 258
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	5 cut(s)	84, 150, 252, 255, 258
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	16, 204, 309
HphI	GGTGA	2 cut(s)	11, 31
Hpy188I	TCNGA	3 cut(s)	173, 220, 318
Hpy188III	TCNNGA	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	170, 260
HpyCH4V	TGCA	2 cut(s)	200, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	183, 345
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	74, 163, 238
LpnPI	CCDG	6 cut(s)	93, 112, 119, 186, 287, 353
Lsp1109I	GCAGC	5 cut(s)	70, 136, 238, 244, 266
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	57, 275, 378
MalI	GATC	3 cut(s)	76, 165, 240
MboI	GATC	3 cut(s)	74, 163, 238
MboII	GAAGA	3 cut(s)	167, 170, 356
MflI	RGATCY	2 cut(s)	74, 163
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	2 cut(s)	212, 286
MnlI	CCTC	4 cut(s)	85, 154, 192, 236
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	3 cut(s)	74, 163, 238
NmuCI	GTSAC	2 cut(s)	57, 378
PfeI	GAWTC	2 cut(s)	16, 204
PkrI	GCNGC	5 cut(s)	85, 151, 253, 256, 259
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspEI	GGTNACC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	74, 163
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	84, 150, 252, 255, 258
Sau3AI	GATC	3 cut(s)	74, 163, 238
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	318
SetI	ASST	8 cut(s)	24, 85, 96, 123, 151, 253, 259, 380
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	3 cut(s)	78, 112, 252
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	353
TasI	AATT	1 cut(s)	43
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	16, 204
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	57, 378
TseI	GCWGC	5 cut(s)	83, 149, 251, 254, 257
Tsp45I	GTSAC	2 cut(s)	57, 378
TspDTI	ATGAA	2 cut(s)	37, 347
TspRI	CASTG	1 cut(s)	58
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.