Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

16817109 .. 16818460

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAGCTCTGGGATTTCCTTCTCTCAACACCCTCAGCATTTTGTGCTCAAGTTCTCAGAAACGAAAAGCCACCAAACCACCATGTCAAAGAACACATTTTTCAAGCATTTCACCTCCCTCTTCCCTAAAACTCACACCCTCTTACAGAAGTTACCATTTTAGGAGTGCCACTCGTATGCAGGGTGACAGTGAAGATTACGAGTTGAAGCAAATGAGGGATATGGCTGCTGCCAAAAAGAGATGGGAAGCTCTGGCATGGGTTAAAGGCTCGATCTGGATTCCATTAATTGATGTCGGTCAACTTGGGCTACCCCAAAAATCCGCTAAGCTCAGAAGCTTCGGATTTTATGGAACAAATGGGTCTCAGAGAAGCAGATTACACTGCAGTGGCAGCGTAGGACCTGGTGGGCCCGGATTTGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

143

Amino Acids

15.55

Weight (kDa)

10.13

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	105, 208
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	4 cut(s)	8, 251, 331, 339
AluI	AGCT	4 cut(s)	8, 251, 331, 339
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	410
ApaI	GGGCCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	227, 230, 393
AseI	ATTAAT	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	401, 410, 411
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	105, 197
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	214, 217, 405
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	3 cut(s)	228, 231, 394
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	3 cut(s)	229, 232, 395
Bme1390I	CCNGG	2 cut(s)	405, 414
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	401, 410, 411
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	405, 414
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	49, 71, 346, 380
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	214, 217, 405
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	414, 423
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	369
Bsp120I	GGGCCC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	50, 414
Bsp143I	GATC	1 cut(s)	273
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	4 cut(s)	48, 70, 345, 379
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstDEI	CTNAG	5 cut(s)	35, 57, 327, 332, 366
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 393
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	403, 412
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	214, 217, 405
BsuRI	GGCC	1 cut(s)	412
BtsI	GCAGTG	2 cut(s)	382, 394
BtsIMutI	CAGTG	3 cut(s)	196, 382, 394
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	401, 410, 411
CsiI	ACCWGGT	1 cut(s)	403
CviAII	CATG	2 cut(s)	84, 258
CviJI	RGCY	9 cut(s)	8, 71, 227, 251, 270, 310, 331, 339, 412
CviKI_1	RGCY	9 cut(s)	8, 71, 227, 251, 270, 310, 331, 339, 412
DdeI	CTNAG	5 cut(s)	35, 57, 327, 332, 366
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	2 cut(s)	87, 261
FaiI	YATR	5 cut(s)	85, 179, 224, 259, 351
FatI	CATG	2 cut(s)	83, 257
Fnu4HI	GCNGC	3 cut(s)	228, 231, 394
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	228, 231, 394
GluI	GCNGC	3 cut(s)	228, 231, 394
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	414, 423
Hin1II	CATG	2 cut(s)	87, 261
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	414, 423
HphI	GGTGA	2 cut(s)	105, 197
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	4 cut(s)	60, 335, 344, 369
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	181, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 393
HpyF3I	CTNAG	5 cut(s)	35, 57, 327, 332, 366
Hsp92II	CATG	2 cut(s)	87, 261
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	167, 239, 262, 390, 417
Lsp1109I	GCAGC	3 cut(s)	214, 217, 405
MabI	ACCWGGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	152, 185
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	114, 206
MhlI	GDGCHC	2 cut(s)	50, 414
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	5 cut(s)	44, 126, 130, 151, 210
MseI	TTAA	2 cut(s)	264, 287
MslI	CAYNNNNRTG	2 cut(s)	176, 387
MspI	CCGG	2 cut(s)	414, 423
MspR9I	CCNGG	2 cut(s)	405, 414
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	45, 393
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	87, 261
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	229, 232, 395
PpuMI	RGGWCCY	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	412
PspOMI	GGGCCC	1 cut(s)	410
PspPI	GGNCC	3 cut(s)	401, 410, 411
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	176, 387
SaqAI	TTAA	2 cut(s)	264, 287
SatI	GCNGC	3 cut(s)	228, 231, 394
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	401, 410, 411
ScrFI	CCNGG	2 cut(s)	405, 414
SduI	GDGCHC	2 cut(s)	50, 414
SetI	ASST	6 cut(s)	10, 118, 253, 333, 341, 406
SexAI	ACCWGGT	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	176, 387
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	403, 412
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	272
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	264, 287
Tru9I	TTAA	2 cut(s)	264, 287
TscAI	CASTG	3 cut(s)	196, 389, 394
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	227, 230, 393
Tsp45I	GTSAC	1 cut(s)	185
TspRI	CASTG	3 cut(s)	196, 389, 394
VpaK11BI	GGWCC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.