Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

19311143 .. 19313979

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGCTCTGGGATTTCCTTCTCTCAATACTCACAGAATTTCGTGCTCCAGTTCTCAGAAACGAAGAGCCACCAAACCACCATGTCAAAGAACACATTTTTCAAGCATTTCACCTCCATCTTCCCTAAAACTCACACCCTCTCACAGAAGTTACAATTTTCGGAGGAGTGCCACTCGGATGCAAGCTGACAGTGAAGATTACGAGTTGAAGCAAATGAGGGATATGGCTGCAGCCAAAAAGAGATGGGAAGCTCTGGTTAGGGAAGGAAAGGTTAAAGCTTTAACACCAAGGGAAGCCGGCTATGCAATTCAGCTATCTAACAAAACCCTTCTTGATGTTCGTCCCTCTACAGAACACAAAAAGGCATGGGTTAAAGGATCAACCTGGATTCCAATATTTGACGTTGGTAATGAATTCGACGCTGGAACTCTTTCCAGAAAGTTCATGAATTTCACAATGGGGGGTTGGTGGAGTGGCGTTCCTATGTTGTCGTATAACACCCAGTTCGTGGACAAAGTTAGTGAGAAGTTTCCAGAAGATACAGATCTTATTGTTGCATGTCAGAAGGGATTGAGATCTCTGGCCGCTTGTGAGCAGTTGTACAACGCAGGCTACAAAAACCTTTTCTGGGTTCAAGGAGGTTTAGAGGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGACCTCAGCCATTGAAGTTTGCTGGAATTGGTGGGGTTTCAGAATTCCTCGGTTGGACGGATCAGCAAAGAGCTGCAGCTGCCAAAGAAGGTTGGAGTTACCGATTAGTGTTCTCTGCCCGGCTGGTCGGAGTCATTGTCCTTGCCGATGCCTTGTTTTTTGGTGCTCAGCAATTCGGACATTATCTTCAGGATATAAGGTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

297

Amino Acids

33.27

Weight (kDa)

9.28

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	511
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	3 cut(s)	388, 675, 750
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	4 cut(s)	39, 416, 451, 725
AcuI	CTGAAG	2 cut(s)	678, 854
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	511, 631
AgsI	TTSAA	4 cut(s)	105, 211, 638, 697
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	7 cut(s)	8, 188, 254, 281, 316, 755, 761
AluI	AGCT	7 cut(s)	8, 188, 254, 281, 316, 755, 761
Alw21I	GWGCWC	2 cut(s)	50, 850
AlwI	GGATC	3 cut(s)	388, 675, 750
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	6 cut(s)	230, 233, 653, 755, 758, 761
ApoI	RAATTY	4 cut(s)	39, 416, 451, 725
Asp700I	GAANNNNTTC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	50, 850
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	6 cut(s)	217, 245, 640, 742, 748, 770
BccI	CCATC	2 cut(s)	127, 240
BciT130I	CCWGG	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	802
BfmI	CTRYAG	3 cut(s)	231, 351, 756
BglII	AGATCT	2 cut(s)	547, 578
BisI	GCNGC	7 cut(s)	231, 234, 588, 654, 756, 759, 762
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	7 cut(s)	232, 235, 589, 655, 757, 760, 763
Bme1390I	CCNGG	2 cut(s)	388, 802
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	683
BmrFI	CCNGG	2 cut(s)	388, 802
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	171, 820
BmuI	ACTGGG	1 cut(s)	499
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuMI	CCSGG	1 cut(s)	802
BsaBI	GATNNNNATC	2 cut(s)	546, 577
BsaJI	CCNNGG	2 cut(s)	290, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 631
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	51, 505
Bse8I	GATNNNNATC	2 cut(s)	546, 577
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	290, 730
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	2 cut(s)	546, 577
BseLI	CCNNNNNNNGG	2 cut(s)	511, 631
BseMII	CTCAG	3 cut(s)	71, 701, 863
BseNI	ACTGG	2 cut(s)	51, 505
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	6 cut(s)	217, 245, 640, 742, 748, 770
BshFI	GGCC	1 cut(s)	587
BsiHKAI	GWGCWC	2 cut(s)	50, 850
BsiSI	CCGG	2 cut(s)	300, 802
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	511, 631
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	50, 850
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	380, 547, 578, 667, 742
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	3 cut(s)	70, 700, 862
BspHI	TCATGA	1 cut(s)	447
BspMAI	CTGCAG	2 cut(s)	235, 760
BspPI	GGATC	3 cut(s)	388, 675, 750
BspQI	GCTCTTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	51, 505
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	290, 730
BssMI	GATC	5 cut(s)	380, 547, 578, 667, 742
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	61, 657
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	186, 301, 613
BstDEI	CTNAG	3 cut(s)	57, 687, 849
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	383, 550, 581, 670, 745
BstMBI	GATC	5 cut(s)	380, 547, 578, 667, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 761
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	386, 800
BstSFI	CTRYAG	3 cut(s)	231, 351, 756
BstV1I	GCAGC	6 cut(s)	217, 245, 640, 742, 748, 770
BstX2I	RGATCY	3 cut(s)	547, 578, 667
BstYI	RGATCY	3 cut(s)	547, 578, 667
BsuRI	GGCC	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	199, 886
Cac8I	GCNNGC	3 cut(s)	186, 301, 613
CciI	TCATGA	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	4 cut(s)	84, 369, 448, 561
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	57, 687, 849
DpnI	GATC	5 cut(s)	382, 549, 580, 669, 744
DpnII	GATC	5 cut(s)	380, 547, 578, 667, 742
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	61, 657
EarI	CTCTTC	2 cut(s)	61, 657
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	678, 854
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRI	GAATTC	2 cut(s)	416, 725
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	4 cut(s)	87, 372, 451, 564
FaiI	YATR	9 cut(s)	85, 227, 306, 370, 449, 488, 498, 562, 878
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	83, 368, 447, 560
Fnu4HI	GCNGC	7 cut(s)	231, 234, 588, 654, 756, 759, 762
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	7 cut(s)	231, 234, 588, 654, 756, 759, 762
GluI	GCNGC	7 cut(s)	231, 234, 588, 654, 756, 759, 762
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	2 cut(s)	300, 802
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	87, 372, 451, 564
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	2 cut(s)	391, 813
HpaII	CCGG	2 cut(s)	300, 802
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	8 cut(s)	60, 165, 180, 567, 677, 724, 812, 860
Hpy188III	TCNNGA	5 cut(s)	335, 438, 448, 536, 872
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	6 cut(s)	30, 260, 341, 562, 674, 764
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	184, 233, 308, 560, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 761
HpyF3I	CTNAG	3 cut(s)	57, 687, 849
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	4 cut(s)	87, 372, 451, 564
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	380, 547, 578, 667, 742
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	6 cut(s)	217, 245, 640, 742, 748, 770
LweI	GCATC	2 cut(s)	171, 820
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	152, 779
MalI	GATC	5 cut(s)	382, 549, 580, 669, 744
MboI	GATC	5 cut(s)	380, 547, 578, 667, 742
MboII	GAAGA	7 cut(s)	78, 114, 209, 551, 671, 674, 860
MflI	RGATCY	3 cut(s)	547, 578, 667
MhlI	GDGCHC	2 cut(s)	50, 850
MluCI	AATT	8 cut(s)	39, 157, 309, 416, 451, 708, 725, 854
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	3 cut(s)	716, 755, 790
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	3 cut(s)	276, 284, 375
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	300, 802
MspR9I	CCNGG	2 cut(s)	388, 802
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	305, 761
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	802
NdeII	GATC	5 cut(s)	380, 547, 578, 667, 742
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	4 cut(s)	87, 372, 451, 564
NspI	RCATGY	1 cut(s)	564
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	61
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	7 cut(s)	232, 235, 589, 655, 757, 760, 763
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	683
PspPPI	RGGWCCY	1 cut(s)	683
PstI	CTGCAG	2 cut(s)	235, 760
PsuI	RGATCY	3 cut(s)	547, 578, 667
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	276, 284, 375
SatI	GCNGC	7 cut(s)	231, 234, 588, 654, 756, 759, 762
Sau3AI	GATC	5 cut(s)	380, 547, 578, 667, 742
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	388, 802
SduI	GDGCHC	2 cut(s)	50, 850
SfaNI	GCATC	2 cut(s)	171, 820
SfcI	CTRYAG	3 cut(s)	231, 351, 756
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	8 cut(s)	39, 157, 309, 416, 451, 708, 725, 854
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	386, 800
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	420
TasI	AATT	8 cut(s)	39, 157, 309, 416, 451, 708, 725, 854
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	276, 284, 375
Tru9I	TTAA	3 cut(s)	276, 284, 375
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	6 cut(s)	230, 233, 653, 755, 758, 761
TspDTI	ATGAA	3 cut(s)	429, 436, 464
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	4 cut(s)	39, 416, 451, 725
XceI	RCATGY	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.