Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Reverse (-)

34156035 .. 34180741

Gene Structure 24707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAAGCTGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTACCAAAAAAAGATGGGATTCTCTGGCATGGGTCAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTGACGAATTCGATGTTGGAACTCTTTATAGAAAGATTATGGGATTCACTGTGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAAGTATGTCAGTTTTGGAGTCACTTCAATGAGTTCAATCCGTGCCATGGCTTTCTTGCTTTTCGTCTTGATGTTGTTAGTACTGCACGAGACTCAAGAGAGACCATTCATCAAGAGTATCAGAAGGTTGTCCAGAGGCGAATTTTTACAAAAACAAGCACCAAAACTGCAACACACAAAGATAGATGAAATTATGAAATTAAAGCCGGATCAAAGGAGGTTCTATCAGATCCAGAAGCTGCGAGCTGACCAAAAGCAGCGTCTTCAGCCAGAGACATCGTCGAGCTCATTGCTGGAGCAGCAAGAGGAAGAAGGCAGAGTGCTCCTCCGCCGGAACTGGAGATTGGAGAGAGAGATGGAGAAACTAGATGGCACCAGGACTGAGTTCGACGAGGAGAGAGCGACAGAGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

209

Amino Acids

24.69

Weight (kDa)

9.07

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	2 cut(s)	429, 436
AcsI	RAATTY	2 cut(s)	128, 353
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	31, 240, 249
AjnI	CCWGG	2 cut(s)	98, 587
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 539, 571
AluBI	AGCT	5 cut(s)	8, 451, 458, 498, 622
AluI	AGCT	5 cut(s)	8, 451, 458, 498, 622
Alw21I	GWGCWC	2 cut(s)	500, 537
Alw26I	GTCTC	3 cut(s)	296, 307, 479
AlwI	GGATC	2 cut(s)	429, 436
AlwNI	CAGNNNCTG	1 cut(s)	451
ApeKI	GCWGC	4 cut(s)	50, 451, 469, 511
ApoI	RAATTY	2 cut(s)	128, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AsuHPI	GGTGA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	500, 537
BbvI	GCAGC	4 cut(s)	37, 438, 481, 523
BccI	CCATC	3 cut(s)	60, 562, 575
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	2 cut(s)	100, 589
BcoDI	GTCTC	3 cut(s)	296, 307, 479
BfaI	CTAG	1 cut(s)	578
BisI	GCNGC	4 cut(s)	51, 452, 470, 512
BlsI	GCNGC	4 cut(s)	52, 453, 471, 513
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	100, 589
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	100, 589
BpiI	GAAGAC	1 cut(s)	467
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	2 cut(s)	527, 571
BpuEI	CTTGAG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	100, 589
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	527, 620
BseXI	GCAGC	4 cut(s)	37, 438, 481, 523
BsgI	GTGCAG	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	500, 537
BsiSI	CCGG	2 cut(s)	419, 544
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	296, 307, 479
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	500, 537
Bsp143I	GATC	2 cut(s)	421, 441
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	2 cut(s)	429, 436
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	421, 441
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	100, 589
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	6, 456
BstDEI	CTNAG	1 cut(s)	594
BstDSI	CCRYGG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	424, 444
BstMAI	GTCTC	3 cut(s)	296, 307, 479
BstMBI	GATC	2 cut(s)	421, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	478, 511
BstNI	CCWGG	2 cut(s)	100, 589
BstSCI	CCNGG	2 cut(s)	98, 587
BstV1I	GCAGC	4 cut(s)	37, 438, 481, 523
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	6, 456
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	626
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	81, 259, 627
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	2 cut(s)	423, 443
DpnII	GATC	2 cut(s)	421, 441
EciI	GGCGGA	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	98, 587
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	84, 262, 630
FaiI	YATR	9 cut(s)	47, 82, 150, 161, 210, 219, 260, 407, 628
FatI	CATG	3 cut(s)	80, 258, 626
Fnu4HI	GCNGC	4 cut(s)	51, 452, 470, 512
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	4 cut(s)	51, 452, 470, 512
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	4 cut(s)	51, 452, 470, 512
GsuI	CTGGAG	2 cut(s)	527, 571
HapII	CCGG	2 cut(s)	419, 544
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	84, 262, 630
HinfI	GANTC	5 cut(s)	71, 103, 165, 231, 304
HpaII	CCGG	2 cut(s)	419, 544
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	335, 441
Hpy188III	TCNNGA	6 cut(s)	280, 308, 325, 345, 445, 627
Hpy99I	CGWCG	2 cut(s)	496, 605
HpyAV	CCTTC	2 cut(s)	330, 518
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	4, 298, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	478, 511
HpyF3I	CTNAG	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	84, 262, 630
Kzo9I	GATC	2 cut(s)	421, 441
LmnI	GCTCC	2 cut(s)	508, 540
Lsp1109I	GCAGC	4 cut(s)	37, 438, 481, 523
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	122, 232
MalI	GATC	2 cut(s)	423, 443
MboI	GATC	2 cut(s)	421, 441
MboII	GAAGA	3 cut(s)	29, 467, 533
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	500, 537
MluCI	AATT	4 cut(s)	128, 353, 402, 410
MlyI	GAGTC	2 cut(s)	240, 298
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	341, 423, 511, 548, 598
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	2 cut(s)	419, 544
MspR9I	CCNGG	2 cut(s)	100, 589
MvaI	CCWGG	2 cut(s)	100, 589
MwoI	GCNNNNNNNGC	2 cut(s)	478, 511
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	421, 441
NlaIII	CATG	3 cut(s)	84, 262, 630
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	2 cut(s)	122, 232
PagI	TCATGA	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	71, 103, 165
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	52, 453, 471, 513
PleI	GAGTC	2 cut(s)	239, 298
PpsI	GAGTC	2 cut(s)	239, 298
Psp124BI	GAGCTC	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	98, 587
PspGI	CCWGG	2 cut(s)	98, 587
PspN4I	GGNNCC	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	441
PsyI	GACNNNGTC	1 cut(s)	490
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	4 cut(s)	51, 452, 470, 512
Sau3AI	GATC	2 cut(s)	421, 441
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	2 cut(s)	240, 298
ScrFI	CCNGG	2 cut(s)	100, 589
SduI	GDGCHC	2 cut(s)	500, 537
SetI	ASST	8 cut(s)	10, 101, 341, 434, 453, 460, 500, 624
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	128, 353, 402, 410
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	98, 587
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	4 cut(s)	24, 132, 494, 600
TasI	AATT	4 cut(s)	128, 353, 402, 410
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	3 cut(s)	71, 103, 165
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	122, 232
TseI	GCWGC	4 cut(s)	50, 451, 469, 511
Tsp45I	GTSAC	2 cut(s)	122, 232
TspDTI	ATGAA	5 cut(s)	30, 310, 414, 422, 615
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	128, 353
XspI	CTAG	1 cut(s)	578
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.