Rroxscaffold_5G00338510

Rhodanese-like domain-containing protein 11

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
6697057 .. 6697599
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338510.1

Sequence Viewer

Length: 321 bp
ATGGAAGCCGTGGGATTTCGGTCTCCGAATACTCACACCATTTTGTGCTCTAGTTTTCAAAAACAAAAACCCACCAAATTACCATATGAAACAAACCATTTTTCAAGCTCTTCTTCAAAACCAAAAGGACCCTCTTACAGATTCCACTATTTTCGTAGGAGTGCTACAAGAATGCAAGCTGATAATGAAGAATTGGAGTTGAAGCAAATGAGAGATATGGTTGCTGCAAAAAAGAATGGTATATATGTTGTTAGGGACGAAAAGATTAAACCTTTAACACCAAGGGAAGCTGGGTATGCAATTCAGCTATCCAAGTTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.26

Weight (kDa)

9.9

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 59, 105, 117, 202
AluBI AGCT 4 cut(s) 108, 179, 290, 307
AluI AGCT 4 cut(s) 108, 179, 290, 307
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 9, 281
BseDI CCNNGG 2 cut(s) 9, 281
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 9, 281
BssT1I CCWWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 128
CviJI RGCY 5 cut(s) 8, 108, 179, 290, 307
CviKI_1 RGCY 5 cut(s) 8, 108, 179, 290, 307
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaiI YATR 7 cut(s) 85, 87, 218, 242, 244, 246, 297
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 175, 227, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
LguI GCTCTTC 1 cut(s) 115
LpnPI CCDG 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 51
MboII GAAGA 3 cut(s) 102, 105, 200
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 3 cut(s) 77, 191, 300
MnlI CCTC 1 cut(s) 142
MseI TTAA 2 cut(s) 267, 275
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 115
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 267, 275
SatI GCNGC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 110, 181, 274, 292, 309
SgeI CNNG 7 cut(s) 22, 63, 117, 180, 188, 294, 303
SinI GGWCC 1 cut(s) 128
Sse9I AATT 3 cut(s) 77, 191, 300
SspMI CTAG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 281
TaqII GACCGA 1 cut(s) 9
TasI AATT 3 cut(s) 77, 191, 300
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 267, 275
Tru9I TTAA 2 cut(s) 267, 275
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 102, 201
VpaK11BI GGWCC 1 cut(s) 128
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.