Rh3AG197200

Rhodanese-like domain-containing protein 11

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
19276307 .. 19280491
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG197200.1

Sequence Viewer

Length: 408 bp
ATGAAACAAACCATTGTTCAAGCTCTTCTTCAATACCGAAATGACCCTCTTACAGAACCACCATTTTATAAGAGTGCTACAAGAATGCAAGCTGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTACCAAAAAAAGATGGGATGCTCTGGCATGGGTTAAAGGCTCAACTTGGATTCCAATTTTTGATGTTGGTGACAAATTCGATGTTGGAACTCTTTATAGAAAGATTATGGGATTCACTATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAAGTATGTCAGTTTTGGAGTCACTTCAATGAGTTCAATCTGTGCCATGGCTTTCTTGCTTTTCATCTTGATGTTGTTAGTACTGCACGAGTTAAGTTCATTGATTACATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

8.71

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 5 cut(s) 20, 32, 115, 324, 333
AluBI AGCT 2 cut(s) 23, 92
AluI AGCT 2 cut(s) 23, 92
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 218
BauI CACGAG 1 cut(s) 383
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 144
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmcAI AGTACT 1 cut(s) 378
BmsI GCATC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 365
BsmI GAATGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 342
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 165, 343
CviJI RGCY 5 cut(s) 23, 92, 134, 177, 347
CviKI_1 RGCY 5 cut(s) 23, 92, 134, 177, 347
CviQI GTAC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 168, 346
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 2 cut(s) 164, 342
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 168, 346
HinfI GANTC 3 cut(s) 187, 249, 315
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 88, 382
Hsp92II CATG 2 cut(s) 168, 346
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 206, 316
MboII GAAGA 3 cut(s) 17, 20, 113
MluCI AATT 2 cut(s) 192, 212
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 1 cut(s) 57
MseI TTAA 2 cut(s) 171, 389
MslI CAYNNNNRTG 2 cut(s) 323, 365
Mva1269I GAATGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 342
NlaIII CATG 2 cut(s) 168, 346
NmuCI GTSAC 2 cut(s) 206, 316
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 187, 249
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PsiI TTATAA 1 cut(s) 69
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 2 cut(s) 323, 365
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 171, 389
SatI GCNGC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 378
SchI GAGTC 1 cut(s) 324
SetI ASST 2 cut(s) 25, 94
SfaNI GCATC 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 323, 365
Sse9I AATT 2 cut(s) 192, 212
StyI CCWWGG 1 cut(s) 342
TaqI TCGA 2 cut(s) 108, 216
TasI AATT 2 cut(s) 192, 212
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 2 cut(s) 187, 249
Tru1I TTAA 2 cut(s) 171, 389
Tru9I TTAA 2 cut(s) 171, 389
TseFI GTSAC 2 cut(s) 206, 316
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 206, 316
TspDTI ATGAA 4 cut(s) 17, 114, 349, 384
XapI RAATTY 1 cut(s) 212
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.