Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

26174912 .. 26176738

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1168500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGCGGAGGAGTACTGCCACTCGGATGCAGGGTGACAGTGAAGATTACGAGTTGAAGCAAATGAGGGATATGGCTGCTGCCAAAAAGAGATGGGAAGCTCTGGTATGTTGCTCGATTCCTACGAAATTCGAAGACAGAAAAACAAAACGACTTTTTGTGTATGTCAGAAAAACCTTTTCTGGGTTCAAGGAGGTAGAGGCTGCTGAAGAAGAGGATCTTGCCAGAGAAGGCCCTCTGCCATTTAAGTTTGCTGGAATTGCTGCCAAAGAAGGTTGGAGTTACCGATTAGTGTTCTCTGCCCGGCTGGTCAGAGTCATTCTCCTTGCCGATACCTTGTTTCTTGGTGCTCAGCAATTTGGACATTATCTTCAGGATACAAGGTCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

131

Amino Acids

15.11

Weight (kDa)

9.36

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	228, 356
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	58, 190
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	4 cut(s)	77, 80, 203, 263
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	64, 67, 190, 250
BccI	CCATC	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	78, 81, 204, 264
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	4 cut(s)	79, 82, 205, 265
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	64, 67, 190, 250
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	132
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	302
BstV1I	GCAGC	4 cut(s)	64, 67, 190, 250
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	5 cut(s)	77, 101, 203, 234, 307
CviKI_1	RGCY	5 cut(s)	77, 101, 203, 234, 307
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	228, 356
EcoO109I	RGGNCCY	1 cut(s)	233
FaiI	YATR	3 cut(s)	74, 109, 165
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
Fnu4HI	GCNGC	4 cut(s)	78, 81, 204, 264
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	4 cut(s)	78, 81, 204, 264
GluI	GCNGC	4 cut(s)	78, 81, 204, 264
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	304
HinfI	GANTC	2 cut(s)	118, 315
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	4 cut(s)	27, 170, 314, 392
Hpy188III	TCNNGA	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	224, 266
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	17, 89, 168, 238, 240, 293, 317, 359
Lsp1109I	GCAGC	4 cut(s)	64, 67, 190, 250
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	35, 281, 384
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	5 cut(s)	56, 146, 221, 224, 362
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	3 cut(s)	128, 258, 356
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	3, 60, 187, 193, 208, 246
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	35, 384
NspV	TTCGAA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	79, 82, 205, 265
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	78, 81, 204, 264
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	6 cut(s)	103, 179, 198, 277, 338, 386
SfaNI	GCATC	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	128, 258, 356
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	116, 132
TasI	AATT	3 cut(s)	128, 258, 356
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	35, 384
TseI	GCWGC	4 cut(s)	77, 80, 203, 263
Tsp45I	GTSAC	2 cut(s)	35, 384
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.