Rh7BG125200

Rhodanese-like domain-containing protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002465
Physical Location & Seq
Forward (+)
9300466 .. 9305764
5299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG125200.1

Sequence Viewer

Length: 660 bp
ATGGAAGCTCTGGGATTTCCTTCTCTGAATACTCACACCATTTCGTGCTCTAGTTTTCGGCAACGAACACCCACCAAATTACCATATGAAACAAACCATTTCTCAAGCTCTTCTTCAAAACCAAAAGGACCCTCTTACAGAACCCACCATTTTCGTAGGAGTGCTACACGAATGCAAGCTGATAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTGCCAAGAAAAGATGGGATGCTCTGATTAGGGATGGAAAGGTTAAACCTTTAACACCAAGGGAAGCTGGGTATGCAATTCAGCTATCTAACAAAACCCTTCTTGATGTTCGTCCCTCTACAGAACACAAAAAGGCATGGGTCAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTGACGAATTCGATGCTGGAACTCTTTCCAGAAAGATTATGGGATTCACTATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAACCAGTTCTTGTCTAAGGTTGATGAGAAATTTCCGAAGGATACTGATCTTATCGTTGCATGCCAGAGGGGATTGAGATCTATAGCTGCTTGTGAGGTGCTGTACAATGCTGGCTACAGAAACCTTTTCTGGGTTCAGGGGGGTTTAGAGGCTGCTGAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese

Protein Analysis

219

Amino Acids

24.79

Weight (kDa)

9.22

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhodanese PF00581 105 - 216 2.8e-09 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 407, 521
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 1 cut(s) 622
AgsI TTSAA 2 cut(s) 117, 202
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 6 cut(s) 8, 108, 179, 290, 307, 578
AluI AGCT 6 cut(s) 8, 108, 179, 290, 307, 578
Alw21I GWGCWC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 221, 224, 578, 644
ApoI RAATTY 2 cut(s) 407, 521
Asp700I GAANNNNTTC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 208, 211, 565, 631
BccI CCATC 2 cut(s) 231, 251
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 379
BciVI GTATCC 1 cut(s) 526
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 3 cut(s) 342, 573, 607
BfuI GTATCC 1 cut(s) 526
BglII AGATCT 1 cut(s) 569
BisI GCNGC 4 cut(s) 222, 225, 579, 645
BlsI GCNGC 4 cut(s) 223, 226, 580, 646
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 232, 403
BpuEI CTTGAG 1 cut(s) 88
BsaBI GATNNNNATC 2 cut(s) 537, 568
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 496
Bse8I GATNNNNATC 2 cut(s) 537, 568
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 247, 262
BseJI GATNNNNATC 2 cut(s) 537, 568
BseLI CCNNNNNNNGG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 4 cut(s) 208, 211, 565, 631
BseYI CCCAGC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 2 cut(s) 538, 569
BspLI GGNNCC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 538, 569
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 379
Bst6I CTCTTC 2 cut(s) 115, 648
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 177, 553, 604
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 247, 262
BstKTI GATC 2 cut(s) 541, 572
BstMBI GATC 2 cut(s) 538, 569
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 3 cut(s) 342, 573, 607
BstV1I GCAGC 4 cut(s) 208, 211, 565, 631
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuI GTATCC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 247, 262
Cac8I GCNNGC 3 cut(s) 177, 553, 604
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 595
CviAII CATG 2 cut(s) 360, 552
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 540, 571
DpnII GATC 2 cut(s) 538, 569
Eam1104I CTCTTC 2 cut(s) 115, 648
EarI CTCTTC 2 cut(s) 115, 648
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 363, 555
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 359, 551
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 222, 225, 579, 645
FokI GGATG 2 cut(s) 254, 269
Fsp4HI GCNGC 4 cut(s) 222, 225, 579, 645
FspBI CTAG 1 cut(s) 51
GluI GCNGC 4 cut(s) 222, 225, 579, 645
GsaI CCCAGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 363, 555
HinfI GANTC 2 cut(s) 382, 444
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 3 cut(s) 27, 249, 528
Hpy188III TCNNGA 2 cut(s) 326, 429
HpyAV CCTTC 3 cut(s) 30, 332, 523
HpyCH4V TGCA 3 cut(s) 175, 299, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 2 cut(s) 363, 555
Kzo9I GATC 2 cut(s) 538, 569
LguI GCTCTTC 1 cut(s) 115
Lsp1109I GCAGC 4 cut(s) 208, 211, 565, 631
LweI GCATC 2 cut(s) 232, 403
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 540, 571
MboI GATC 2 cut(s) 538, 569
MboII GAAGA 3 cut(s) 102, 105, 200
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 4 cut(s) 77, 300, 407, 521
MnlI CCTC 5 cut(s) 142, 349, 552, 580, 634
MroXI GAANNNNTTC 1 cut(s) 424
MseI TTAA 2 cut(s) 267, 275
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 85
NdeII GATC 2 cut(s) 538, 569
NlaIII CATG 2 cut(s) 363, 555
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 555
PaeI GCATGC 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 115
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 382, 444
PkrI GCNGC 4 cut(s) 223, 226, 580, 646
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PsuI RGATCY 1 cut(s) 569
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 267, 275
SatI GCNGC 4 cut(s) 222, 225, 579, 645
Sau3AI GATC 2 cut(s) 538, 569
Sau96I GGNCC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 2 cut(s) 232, 403
SfcI CTRYAG 3 cut(s) 342, 573, 607
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SphI GCATGC 1 cut(s) 555
Sse9I AATT 4 cut(s) 77, 300, 407, 521
SspI AATATT 1 cut(s) 390
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 281
TaqI TCGA 2 cut(s) 195, 411
TasI AATT 4 cut(s) 77, 300, 407, 521
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 2 cut(s) 382, 444
Tru1I TTAA 2 cut(s) 267, 275
Tru9I TTAA 2 cut(s) 267, 275
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 221, 224, 578, 644
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 102, 201
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 2 cut(s) 407, 521
XceI RCATGY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.