Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Reverse (-)

57224702 .. 57228097

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGCTCTGGGATTTCCTTCTCTGAATACTCACACCATTTCGTGCTCTAGTTTTCGGCAACGAACACCCGCCAAATTACCATATGAAACAAACCATTTCTCAAGCTCTTCTTCAAAACCAAAAGGACCCTCTTACAGAGCCCACCATTTTCGTAGGAGTGCTACACGAATGCAAGCAGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTGCCAAGAAAAGATGGGATGCTCTGATTAGGGATGGAAAGGTTAAACCTTTAACACCAAGGGAAGCTGGGTATGCAATCCAGCTATCTAACAAAACCCTTCTTGATGTTCGTCCCTCTACAGAACACAAAAAGGCATGGGTCAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTGACAAATTCGATGCTGGAACTCTTTCCAGAAAGATTATGGGATTCACTATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAACCAGTTCTTGTCTAAGGTTGATGAGAAATTTCCGAAGGATACTGATCTTATCGTTGCATGCCAGAGGGGATTGAGTGAGTCTCGTCTTATATGGGAGCAGGATCTTGTCAGAGAAGGCCCTCAGCCATTTAAGTTCGCAGGAATCGGTGGGGTTTCAGAGTTCCTCGGTTGGACTGATCAACAAAGAGCTGCAGCTGCTAAAGAAGGGTGGGGTTACCGATTTATGTTCTCTGCCCGTCTGGTTGGAGTCTTTCTGATTGCTGATGCCTTATTTCTTGGTTCTCAGCAACTAGTTCATTATCTTCAGGATATAAGAGAGACACTGGATCTGCGCCATGATAACAGTTTTGGATGCCAGAGTACCTCAGAAAGCAGATTGCATCCTCATTATTGTTCACACCAGTCACTGAAGTTGGATCTAAGCATGATTTATACCGTGTGGGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

314

Amino Acids

35.6

Weight (kDa)

9.27

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	603, 828, 918
AcsI	RAATTY	2 cut(s)	407, 521
AcuI	CTGAAG	2 cut(s)	782, 923
AfaI	GTAC	1 cut(s)	856
AgsI	TTSAA	2 cut(s)	117, 202
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	8, 108, 290, 307, 683, 689
AluI	AGCT	6 cut(s)	8, 108, 290, 307, 683, 689
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	579, 806
AlwI	GGATC	3 cut(s)	603, 828, 918
AlwNI	CAGNNNCTG	1 cut(s)	901
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	6 cut(s)	221, 224, 683, 686, 689, 938
ApoI	RAATTY	2 cut(s)	407, 521
Asp700I	GAANNNNTTC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	128, 611
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	6 cut(s)	208, 211, 670, 676, 698, 925
BccI	CCATC	2 cut(s)	231, 251
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	579, 806
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	51, 785
BfmI	CTRYAG	2 cut(s)	342, 684
BfuI	GTATCC	1 cut(s)	526
BisI	GCNGC	6 cut(s)	222, 225, 684, 687, 690, 939
BlsI	GCNGC	6 cut(s)	223, 226, 685, 688, 691, 940
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 611
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	5 cut(s)	232, 403, 748, 836, 883
BplI	GAGNNNNNCTC	2 cut(s)	559, 591
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	281, 658
Bse1I	ACTGG	3 cut(s)	496, 822, 895
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	281, 658
BseGI	GGATG	4 cut(s)	247, 262, 851, 874
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	629, 791, 873
BseNI	ACTGG	3 cut(s)	496, 822, 895
BseXI	GCAGC	6 cut(s)	208, 211, 670, 676, 698, 925
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	579, 806
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	50, 145
Bsp143I	GATC	5 cut(s)	538, 595, 670, 820, 910
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	3 cut(s)	628, 790, 872
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	3 cut(s)	603, 828, 918
BspQI	GCTCTTC	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	496, 822, 895
BssECI	CCNNGG	2 cut(s)	281, 658
BssMI	GATC	5 cut(s)	538, 595, 670, 820, 910
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	839, 931
Bst6I	CTCTTC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	177, 553
BstDEI	CTNAG	5 cut(s)	507, 615, 777, 859, 914
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	4 cut(s)	247, 262, 851, 874
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	5 cut(s)	541, 598, 673, 823, 913
BstMAI	GTCTC	2 cut(s)	579, 806
BstMBI	GATC	5 cut(s)	538, 595, 670, 820, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 689
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	555
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	2 cut(s)	342, 684
BstV1I	GCAGC	6 cut(s)	208, 211, 670, 676, 698, 925
BstX2I	RGATCY	3 cut(s)	595, 820, 910
BstYI	RGATCY	3 cut(s)	595, 820, 910
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	612
BtsCI	GGATG	4 cut(s)	247, 262, 851, 874
BtsIMutI	CAGTG	2 cut(s)	815, 899
Cac8I	GCNNGC	2 cut(s)	177, 553
CaiI	CAGNNNCTG	1 cut(s)	901
CfoI	GCGC	1 cut(s)	828
Cfr13I	GGNCC	2 cut(s)	128, 611
Csp6I	GTAC	1 cut(s)	855
CviAII	CATG	4 cut(s)	360, 552, 830, 919
CviQI	GTAC	1 cut(s)	855
DdeI	CTNAG	5 cut(s)	507, 615, 777, 859, 914
DpnI	GATC	5 cut(s)	540, 597, 672, 822, 912
DpnII	GATC	5 cut(s)	538, 595, 670, 820, 910
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	782, 923
Eco91I	GGTNACC	1 cut(s)	707
EcoO109I	RGGNCCY	2 cut(s)	128, 611
EcoO65I	GGTNACC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	4 cut(s)	363, 555, 833, 922
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	4 cut(s)	359, 551, 829, 918
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	222, 225, 684, 687, 690, 939
FokI	GGATG	4 cut(s)	254, 269, 858, 861
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	6 cut(s)	222, 225, 684, 687, 690, 939
FspBI	CTAG	2 cut(s)	51, 785
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	6 cut(s)	222, 225, 684, 687, 690, 939
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	4 cut(s)	363, 555, 833, 922
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HinfI	GANTC	5 cut(s)	382, 444, 572, 636, 741
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	7 cut(s)	27, 249, 528, 605, 652, 750, 862
Hpy188III	TCNNGA	3 cut(s)	326, 429, 800
Hpy8I	GTNNAC	1 cut(s)	890
HpyAV	CCTTC	5 cut(s)	30, 332, 523, 602, 692
HpyCH4III	ACNGT	2 cut(s)	839, 931
HpyCH4V	TGCA	5 cut(s)	175, 299, 551, 686, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 689
HpyF3I	CTNAG	5 cut(s)	507, 615, 777, 859, 914
Hsp92II	CATG	4 cut(s)	363, 555, 833, 922
HspAI	GCGC	1 cut(s)	826
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	538, 595, 670, 820, 910
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	6 cut(s)	208, 211, 670, 676, 698, 925
LweI	GCATC	5 cut(s)	232, 403, 748, 836, 883
MaeI	CTAG	2 cut(s)	51, 785
MaeIII	GTNAC	3 cut(s)	401, 707, 897
MalI	GATC	5 cut(s)	540, 597, 672, 822, 912
MboI	GATC	5 cut(s)	538, 595, 670, 820, 910
MboII	GAAGA	4 cut(s)	102, 105, 200, 788
MflI	RGATCY	3 cut(s)	595, 820, 910
MhlI	GDGCHC	2 cut(s)	50, 145
MluCI	AATT	3 cut(s)	77, 407, 521
MlyI	GAGTC	2 cut(s)	581, 750
MmeI	TCCRAC	3 cut(s)	644, 718, 888
MnlI	CCTC	7 cut(s)	142, 349, 552, 624, 668, 868, 888
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	267, 275, 624
MspA1I	CMGCKG	1 cut(s)	689
MspR9I	CCNGG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	296, 689
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	5 cut(s)	538, 595, 670, 820, 910
NlaIII	CATG	4 cut(s)	363, 555, 833, 922
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	401, 897
NspI	RCATGY	1 cut(s)	555
PaeI	GCATGC	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	115
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	382, 444, 636
PkrI	GCNGC	6 cut(s)	223, 226, 685, 688, 691, 940
PleI	GAGTC	2 cut(s)	580, 749
PpsI	GAGTC	2 cut(s)	580, 749
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	2 cut(s)	128, 611
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	901
PsuI	RGATCY	3 cut(s)	595, 820, 910
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	856
RsaNI	GTAC	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	267, 275, 624
SatI	GCNGC	6 cut(s)	222, 225, 684, 687, 690, 939
Sau3AI	GATC	5 cut(s)	538, 595, 670, 820, 910
Sau96I	GGNCC	2 cut(s)	128, 611
SchI	GAGTC	2 cut(s)	581, 750
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	50, 145
SfaNI	GCATC	5 cut(s)	232, 403, 748, 836, 883
SfcI	CTRYAG	2 cut(s)	342, 684
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	784
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	3 cut(s)	77, 407, 521
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	2 cut(s)	51, 785
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	839, 931
TaqI	TCGA	2 cut(s)	195, 411
TasI	AATT	3 cut(s)	77, 407, 521
TfiI	GAWTC	3 cut(s)	382, 444, 636
Tru1I	TTAA	3 cut(s)	267, 275, 624
Tru9I	TTAA	3 cut(s)	267, 275, 624
TscAI	CASTG	2 cut(s)	822, 906
TseFI	GTSAC	2 cut(s)	401, 897
TseI	GCWGC	6 cut(s)	221, 224, 683, 686, 689, 938
Tsp45I	GTSAC	2 cut(s)	401, 897
TspDTI	ATGAA	3 cut(s)	102, 201, 779
TspRI	CASTG	2 cut(s)	822, 906
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	2 cut(s)	407, 521
XceI	RCATGY	1 cut(s)	555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	51, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.