Rh2DG333600

Bacterial Ig-like domain 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002465
Physical Location & Seq
Reverse (-)
42697504 .. 42714312
16809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG333600.1

Sequence Viewer

Length: 774 bp
ATGAACCCAACCACCAACTCAGTCAAATCTCCACCGCCTTCTTTGGCTCCAACTAGCTCGGCTTCAGCTTCTAGTACTAGTACTACACAGAAGAACAATAAGCTTCAGCTGAATCCGGAGAAAGAAAGCGATGATCGGAAGCAGTCATGGGATCATCACGATATTCTCTCTGTTCTGCGTGAATATAATTCAACTAGTCACTGCTCAACGAGTGCGCGGTTGAGATCAGTTGCTTCTTATAGTGGTAGGAAGGAGACTGTTGTTTATGCTACCGACGTAAATACTGGAGTTGTGATTCGGTGCAAAGTTTTTATCGACAAATTTTCCAGAATCCAGATATTTCATAATTATGTTAAACTTGACTTAGATGGGCTTGCCACTCTTCAAGTCCATGCCTTCGATGATGAAGGTATTTTCATGATGCTGGTTATCACAAGTAGGAGTGCTACAAGAATGCAAGCTGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTACCAAAAAAAGATGGGATTCTCTGGCATGGGTCAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTGACGAATTCGATGTTGGAACTCTTTATAGAAAGATTATGGGATTCACTGTGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAAGTATGTCAGTTTTGGAGTCACTTCAATGAGTTCAATCCGTGCCATGGCTTTCTTGCTTTTCGTCTTGATGTTGTTAGTACTGCACGAGGAGAATCATTGGTTCTAA

Protein Analysis

257

Amino Acids

29.06

Weight (kDa)

7.79

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_NUP210_1st PF22967 52 - 106 4.6e-08 NUP210 Ig-like domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 2 cut(s) 35, 217
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 2 cut(s) 320, 581
AcuI CTGAAG 2 cut(s) 48, 89
AfaI GTAC 3 cut(s) 76, 82, 747
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 5 cut(s) 192, 386, 484, 693, 702
AhlI ACTAGT 2 cut(s) 77, 194
AjnI CCWGG 1 cut(s) 551
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 5 cut(s) 57, 68, 103, 109, 461
AluI AGCT 5 cut(s) 57, 68, 103, 109, 461
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 159
Aor13HI TCCGGA 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 2 cut(s) 320, 581
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 587
BauI CACGAG 1 cut(s) 752
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 362, 513
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 2 cut(s) 77, 194
BfaI CTAG 4 cut(s) 54, 72, 78, 195
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
BmcAI AGTACT 3 cut(s) 76, 82, 747
Bme1390I CCNGG 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 1 cut(s) 711
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 3 cut(s) 133, 151, 224
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 2 cut(s) 35, 217
BspCNI CTCAG 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 3 cut(s) 133, 151, 224
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 711
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 2 cut(s) 259, 625
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 375, 459
BstDEI CTNAG 2 cut(s) 19, 364
BstDSI CCRYGG 1 cut(s) 711
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 136, 154, 227
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 133, 151, 224
BstNI CCWGG 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 551
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 711
BtgZI GCGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 199, 621
Cac8I GCNNGC 2 cut(s) 375, 459
CciI TCATGA 1 cut(s) 417
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 3 cut(s) 75, 81, 746
CviAII CATG 5 cut(s) 147, 392, 418, 534, 712
CviQI GTAC 3 cut(s) 75, 81, 746
DdeI CTNAG 2 cut(s) 19, 364
DpnI GATC 3 cut(s) 135, 153, 226
DpnII GATC 3 cut(s) 133, 151, 224
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 711
Eco57I CTGAAG 2 cut(s) 48, 89
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 5 cut(s) 150, 395, 421, 537, 715
FatI CATG 5 cut(s) 146, 391, 417, 533, 711
Fnu4HI GCNGC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 4 cut(s) 54, 72, 78, 195
GlaI GCGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 306
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 217
Hin1II CATG 5 cut(s) 150, 395, 421, 537, 715
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 8 cut(s) 112, 295, 330, 524, 556, 618, 684, 760
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 587
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 6 cut(s) 116, 158, 327, 334, 418, 733
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 48, 244, 401, 406
HpyCH4III ACNGT 2 cut(s) 259, 625
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 303, 457, 751
HpyF3I CTNAG 2 cut(s) 19, 364
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 5 cut(s) 150, 395, 421, 537, 715
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 133, 151, 224
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 8 cut(s) 129, 270, 340, 347, 410, 515, 538, 565
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 411
MaeI CTAG 4 cut(s) 54, 72, 78, 195
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 197, 575, 685
MalI GATC 3 cut(s) 135, 153, 226
MboI GATC 3 cut(s) 133, 151, 224
MboII GAAGA 3 cut(s) 103, 374, 482
MluCI AATT 4 cut(s) 187, 320, 346, 581
MlyI GAGTC 1 cut(s) 693
MmeI TCCRAC 2 cut(s) 74, 571
MnlI CCTC 1 cut(s) 748
MroI TCCGGA 1 cut(s) 115
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 348, 692
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 459
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 711
NdeII GATC 3 cut(s) 133, 151, 224
NlaIII CATG 5 cut(s) 150, 395, 421, 537, 715
NlaIV GGNNCC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 3 cut(s) 197, 575, 685
PagI TCATGA 1 cut(s) 417
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 7 cut(s) 112, 295, 330, 524, 556, 618, 760
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 3 cut(s) 76, 82, 747
RsaNI GTAC 3 cut(s) 75, 81, 746
RseI CAYNNNNRTG 2 cut(s) 348, 692
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 3 cut(s) 133, 151, 224
ScaI AGTACT 3 cut(s) 76, 82, 747
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 1 cut(s) 553
SetI ASST 8 cut(s) 59, 70, 105, 111, 279, 412, 463, 554
SfaNI GCATC 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 348, 692
SpeI ACTAGT 2 cut(s) 77, 194
Sse9I AATT 4 cut(s) 187, 320, 346, 581
SsiI CCGC 2 cut(s) 35, 217
SspI AATATT 1 cut(s) 564
SspMI CTAG 4 cut(s) 54, 72, 78, 195
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 2 cut(s) 259, 625
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 315, 399, 477, 585
TasI AATT 4 cut(s) 187, 320, 346, 581
TatI WGTACW 3 cut(s) 74, 80, 745
TfiI GAWTC 7 cut(s) 112, 295, 330, 524, 556, 618, 760
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 206, 628
TseFI GTSAC 3 cut(s) 197, 575, 685
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 3 cut(s) 197, 575, 685
TspDTI ATGAA 5 cut(s) 17, 332, 406, 420, 483
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 2 cut(s) 206, 628
XapI RAATTY 2 cut(s) 320, 581
XspI CTAG 4 cut(s) 54, 72, 78, 195
ZrmI AGTACT 3 cut(s) 76, 82, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.