Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

44105027 .. 44189600

Gene Structure 84574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAAAACCCACCAAATTACCATATGAAACAAACCATTGTTCAAGCTCTTCTTCAAAACCGAAAGGACCCTCTTACAGAACCACCATTTTATAAGAGTGCTACAAGAATGCAAGCTGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTACCAAAAAAAGATGGGATGCTCTGGCATGGGTCAAAGGCTCAACCTGGATTCCAATATTTGATGTTGGTGACGAATTCAATGTTGGAACTCTTTATAGAAAGATTATGGGATTCACTATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAACCAGTTGTCAAAGGTTGATCAGAAATTTCCAAAGGATACCAATCTTATCGTTGCATGCCAGAAGGGATTGAGTAATCTACGCTGTATATTGCTCACCAATTTCATTACTGTCACATTTTATTGGCAGATCTATAGCTGCTTCTGGGTTCAGGGGGGTCTAGAGGCTGCTGAAGAAGAGGTGGTCCTAGTACTTTGTAAAGAATGGTGGCTGGGTTATGTGAAGCATGATTTGGCTTTTAAAATTGTCTGCAAGAAGTTGTTTATTCTGGGGCGCTGGGCAGAGGCTGCGACAGGATCGGTGCTGGGCGCTGTGGCAGATGGGTTGTGCAAGGGAGGCGGGTTGCTGCAAGGCGATCTGCGACTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

230

Amino Acids

26.07

Weight (kDa)

8.82

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	236, 347
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	44, 56, 139, 241
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	4 cut(s)	228, 260, 536, 568
AluBI	AGCT	3 cut(s)	47, 116, 459
AluI	AGCT	3 cut(s)	47, 116, 459
AlwI	GGATC	1 cut(s)	625
AlwNI	CAGNNNCTG	1 cut(s)	608
ApeKI	GCWGC	5 cut(s)	158, 459, 488, 608, 667
ApoI	RAATTY	2 cut(s)	236, 347
AspLEI	GCGC	2 cut(s)	597, 632
AspS9I	GGNCC	2 cut(s)	67, 505
AsuHPI	GGTGA	2 cut(s)	242, 409
AvaII	GGWCC	2 cut(s)	67, 505
BbvI	GCAGC	5 cut(s)	145, 446, 475, 595, 654
BccI	CCATC	2 cut(s)	168, 635
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	2 cut(s)	482, 509
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	2 cut(s)	598, 633
BfuI	GTATCC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	5 cut(s)	159, 460, 489, 609, 668
BlsI	GCNGC	5 cut(s)	160, 461, 490, 610, 669
BmcAI	AGTACT	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	67, 505
BmgT120I	GGNCC	2 cut(s)	67, 505
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	325, 690
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	325, 690
BseXI	GCAGC	5 cut(s)	145, 446, 475, 595, 654
BseYI	CCCAGC	3 cut(s)	532, 597, 625
BsmI	GAATGC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	340, 450, 617, 676
BspACI	CCGC	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	325, 690
BssMI	GATC	4 cut(s)	340, 450, 617, 676
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	54, 492
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	114, 379
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	2 cut(s)	598, 633
BstHHI	GCGC	2 cut(s)	597, 632
BstKTI	GATC	4 cut(s)	343, 453, 620, 679
BstMBI	GATC	4 cut(s)	340, 450, 617, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 657
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	5 cut(s)	145, 446, 475, 595, 654
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	114, 379
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	2 cut(s)	597, 632
Cfr13I	GGNCC	2 cut(s)	67, 505
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	3 cut(s)	189, 378, 548
CviQI	GTAC	1 cut(s)	512
DpnI	GATC	4 cut(s)	342, 452, 619, 678
DpnII	GATC	4 cut(s)	340, 450, 617, 676
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	54, 492
EarI	CTCTTC	2 cut(s)	54, 492
Eco47I	GGWCC	2 cut(s)	67, 505
Eco57I	CTGAAG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	192, 381, 551
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	3 cut(s)	188, 377, 547
FauI	CCCGC	1 cut(s)	653
FauNDI	CATATG	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	159, 460, 489, 609, 668
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	159, 460, 489, 609, 668
FspBI	CTAG	2 cut(s)	482, 509
GlaI	GCGC	2 cut(s)	596, 631
GluI	GCNGC	5 cut(s)	159, 460, 489, 609, 668
GsaI	CCCAGC	3 cut(s)	536, 601, 629
HaeII	RGCGCY	2 cut(s)	598, 633
HhaI	GCGC	2 cut(s)	597, 632
Hin1II	CATG	3 cut(s)	192, 381, 551
Hin6I	GCGC	2 cut(s)	595, 630
HinP1I	GCGC	2 cut(s)	595, 630
HinfI	GANTC	2 cut(s)	211, 273
HphI	GGTGA	2 cut(s)	242, 409
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	112, 377, 573, 651, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 657
Hsp92II	CATG	3 cut(s)	192, 381, 551
HspAI	GCGC	2 cut(s)	595, 630
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	340, 450, 617, 676
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	5 cut(s)	145, 446, 475, 595, 654
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	482, 509
MaeIII	GTNAC	2 cut(s)	230, 433
MalI	GATC	4 cut(s)	342, 452, 619, 678
MboI	GATC	4 cut(s)	340, 450, 617, 676
MboII	GAAGA	5 cut(s)	41, 44, 137, 506, 509
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	5 cut(s)	16, 236, 347, 421, 564
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	81, 478, 493, 598, 650
MseI	TTAA	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	608, 657
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	4 cut(s)	340, 450, 617, 676
NlaIII	CATG	3 cut(s)	192, 381, 551
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	230, 433
NspI	RCATGY	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	211, 273
PkrI	GCNGC	5 cut(s)	160, 461, 490, 610, 669
PpuMI	RGGWCCY	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	206
PspFI	CCCAGC	3 cut(s)	532, 597, 625
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	67, 505
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	5 cut(s)	159, 460, 489, 609, 668
Sau3AI	GATC	4 cut(s)	340, 450, 617, 676
Sau96I	GGNCC	2 cut(s)	67, 505
ScaI	AGTACT	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	6 cut(s)	49, 118, 209, 339, 461, 504
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	2 cut(s)	67, 505
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	5 cut(s)	16, 236, 347, 421, 564
SsiI	CCGC	1 cut(s)	660
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	482, 509
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	132
TasI	AATT	5 cut(s)	16, 236, 347, 421, 564
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	211, 273
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	230, 433
TseI	GCWGC	5 cut(s)	158, 459, 488, 608, 667
Tsp45I	GTSAC	2 cut(s)	230, 433
TspDTI	ATGAA	4 cut(s)	17, 41, 138, 415
VpaK11BI	GGWCC	2 cut(s)	67, 505
XapI	RAATTY	2 cut(s)	236, 347
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	2 cut(s)	482, 509
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.