Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

21021354 .. 21024008

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTCTGGAGTGCTACAAGAATGCAAGCTGACAATGAAGATTTCGAGTTGAAGCAAATGAGAGATATGGCTGCTACCAAAAAAAGATGGGATGCTCTGGCATGGGTTAAAGGCTCAACTTGGATTCCAATTTTTGATGTTGGTGACAAATTCGATGTTGGAACTCTTTATAGAAAGATTATGGGATTCACTATGGGGGGTTGGTGGAGTGGTGTGCCTACATTGGCGTATAACAAGTATTTGTCAAAGGTTGATCAGAAATTTCCAAAGGATACCAATCTTATCGTTGCATGCCAGAAGGGATTGAGATCTATAGCTGCTTGTGAGGTGTTGTACAATGCTGGCTACAGAAACCCCTTCTGGGTTCAGGGGGGTCTAGAGACTGCTGAAGACGAGGTAATTATGGTTGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

138

Amino Acids

15.79

Weight (kDa)

7.7

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	149, 260
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	2 cut(s)	29, 317
AluI	AGCT	2 cut(s)	29, 317
Alw26I	GTCTC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	71, 317
ApoI	RAATTY	2 cut(s)	149, 260
AsuHPI	GGTGA	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	58, 304
BccI	CCATC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	312, 346
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	2 cut(s)	72, 318
BlsI	GCNGC	2 cut(s)	73, 319
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	28
BsaBI	GATNNNNATC	2 cut(s)	276, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse8I	GATNNNNATC	2 cut(s)	276, 307
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	2 cut(s)	276, 307
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	58, 304
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	253, 308
BsrGI	TGTACA	1 cut(s)	333
BssMI	GATC	2 cut(s)	253, 308
BstAUI	TGTACA	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	27, 292, 343
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	256, 311
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	253, 308
BstNSI	RCATGY	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	312, 346
BstV1I	GCAGC	2 cut(s)	58, 304
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	3 cut(s)	27, 292, 343
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	102, 291
CviJI	RGCY	5 cut(s)	29, 71, 114, 317, 345
CviKI_1	RGCY	5 cut(s)	29, 71, 114, 317, 345
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	2 cut(s)	255, 310
DpnII	GATC	2 cut(s)	253, 308
Eco57I	CTGAAG	1 cut(s)	408
FaeI	CATG	2 cut(s)	105, 294
FaiI	YATR	9 cut(s)	68, 103, 171, 182, 194, 231, 292, 314, 404
FatI	CATG	2 cut(s)	101, 290
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	72, 318
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	72, 318
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	72, 318
GsuI	CTGGAG	1 cut(s)	28
Hin1II	CATG	2 cut(s)	105, 294
HinfI	GANTC	2 cut(s)	124, 186
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	7, 377
HpyAV	CCTTC	2 cut(s)	292, 367
HpyCH4V	TGCA	2 cut(s)	25, 290
Hsp92II	CATG	2 cut(s)	105, 294
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	253, 308
LpnPI	CCDG	5 cut(s)	83, 308, 327, 346, 353
Lsp1109I	GCAGC	2 cut(s)	58, 304
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	255, 310
MboI	GATC	2 cut(s)	253, 308
MboII	GAAGA	2 cut(s)	50, 401
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	4 cut(s)	129, 149, 260, 399
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	319, 388
MseI	TTAA	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	253, 308
NlaIII	CATG	2 cut(s)	105, 294
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	124, 186
PkrI	GCNGC	2 cut(s)	73, 319
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	72, 318
Sau3AI	GATC	2 cut(s)	253, 308
SetI	ASST	5 cut(s)	31, 252, 319, 330, 399
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	2 cut(s)	312, 346
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	4 cut(s)	129, 149, 260, 399
SspMI	CTAG	1 cut(s)	377
TaqI	TCGA	2 cut(s)	45, 153
TasI	AATT	4 cut(s)	129, 149, 260, 399
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	124, 186
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	71, 317
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	51
XapI	RAATTY	2 cut(s)	149, 260
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.