Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Reverse (-)

41949663 .. 41951644

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1351900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTGCTGAGAAGAAACCGAAGATTCCTTCCGTTGCTCGTGAGGGTTCACCGACTACTCCCAAACTTGTGATTAACTTGACCTCCTCTAAGGGCAATAAAGAGGAGGTTGCTAGATCTATGCCCGTGGCACTTGCCATTCTGAAGGCTGCTAGCTCGATTGCGGAAATGATTGCCCAACGTAGAAGTTCCTCTGTGTTTTCGGTGCCGAAGTTTGTGCTAAAGCCTCTGTCTGGGGCTAAGTCTGGTTCACCTTTAGAGAAGCTTGCTACCATGAAGAGTGACAAGGTGCCCTTGCCTACTAAAGTAGCGCCAAAATCTTTTCCCTCTACTGCTGAGATTGACTCGTCTGTTGAGAAGAATGAGACTGTTCGCGTAGGCAATCGTGAGAAATTCACCAAGTCTGTTTATAGGAAAGCTTATGAGATTTGTGTGCTCTTGGAGCCAAACCTGCTTGAAGATATGGATGTATGTGCCAAGTTTGTTGATGGCGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

167

Amino Acids

17.95

Weight (kDa)

9.67

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	2 cut(s)	205, 289
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	3 cut(s)	156, 265, 419
AluI	AGCT	3 cut(s)	156, 265, 419
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	42, 243, 388
AsuNHI	GCTAGC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	2 cut(s)	205, 289
BauI	CACGAG	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	114, 153
BfoI	RGCGCY	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	207, 291, 444
BmtI	GCTAGC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	76, 119
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	375
BshNI	GGYRCC	2 cut(s)	205, 289
BsiHKAI	GWGCWC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	294, 438
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	207, 291, 444
BspMI	ACCTGC	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	156
BspT107I	GGYRCC	2 cut(s)	205, 289
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	492
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	492
BstC8I	GCNNGC	3 cut(s)	6, 154, 267
BstDEI	CTNAG	4 cut(s)	9, 90, 240, 336
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 451
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	3 cut(s)	6, 154, 267
CfoI	GCGC	1 cut(s)	313
CseI	GACGC	1 cut(s)	481
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	7 cut(s)	149, 156, 226, 239, 265, 419, 445
CviKI_1	RGCY	7 cut(s)	149, 156, 226, 239, 265, 419, 445
DdeI	CTNAG	4 cut(s)	9, 90, 240, 336
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	164
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	122, 275, 411, 423, 464, 472
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	114, 153
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	314
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	2 cut(s)	263, 417
HinfI	GANTC	2 cut(s)	25, 344
HphI	GGTGA	3 cut(s)	42, 243, 388
Hpy166II	GTNNAC	2 cut(s)	50, 251
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	41, 386
Hpy8I	GTNNAC	2 cut(s)	50, 251
HpyAV	CCTTC	2 cut(s)	39, 139
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 451
HpyF3I	CTNAG	4 cut(s)	9, 90, 240, 336
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	4 cut(s)	18, 219, 231, 464
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	114, 153
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	5 cut(s)	25, 34, 289, 370, 470
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	294, 438
MluCI	AATT	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	37, 94, 97, 97, 100, 202, 237, 337
MseI	TTAA	1 cut(s)	75
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	442, 451
NdeII	GATC	1 cut(s)	116
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	3 cut(s)	207, 291, 444
NmuCI	GTSAC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	207, 291, 444
PsuI	RGATCY	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	294, 438
SetI	ASST	9 cut(s)	86, 111, 158, 184, 256, 267, 291, 421, 453
Sse9I	AATT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	2 cut(s)	114, 153
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	22
XapI	RAATTY	1 cut(s)	392
XspI	CTAG	2 cut(s)	114, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.