Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Reverse (-)

15089082 .. 15089673

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGTGTTGTGGCAGGGACCACTGCTTGGACTGCTCAGCTTGGCGACTGGGGCTACGGATTGAGGTGTTGGGGCGCAGAGGTCGAGGGCCTCATGGGCTGCTGGAATGCTGGGCATGCAGGCCTTCTGCCTGTTGGTCTGGGAGAAAATTGGAGGAAAAAACCAGTATGGAGAAATGTGGGTTGCTCCCGAGAAAGAAGGAAAAGAGGATCAAGGCAGATACTTTGACTCGTTTGATCGTTGTCATGGAGCCTACTATGAATAAAGGTGGAAAGAAGAGATATTCCCTGTCTGCTCAAGAGATGCTGGTTAAGAAAAAACTGAAGACTTCCTCCACTGCTCTTGAGGGTCCACCTGCTGTCGAGAGGCTTGTGATTGACATGACTTCTTCTAATGGGAAGAAAAATGAAGCTGCTAGATCTGAGCCTGTGGTGCCTGCTATGTCGAGAATGCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

9.92

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	41, 413
AluI	AGCT	2 cut(s)	41, 413
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	89, 122
ApeKI	GCWGC	2 cut(s)	100, 413
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	19, 89, 350
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	19, 350
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	87, 400
BfaI	CTAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	2 cut(s)	101, 414
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	102, 415
Bme18I	GGWCC	2 cut(s)	19, 350
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	19, 89, 350
BmiI	GGNNCC	4 cut(s)	20, 252, 351, 435
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	282, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	54, 165
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	51, 414
BseNI	ACTGG	2 cut(s)	54, 165
BseXI	GCAGC	2 cut(s)	87, 400
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	91, 124
BshNI	GGYRCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	2 cut(s)	113, 456
BsnI	GGCC	2 cut(s)	91, 124
BsoBI	CYCGRG	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	210, 237, 419
Bsp1720I	GCTNAGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	91, 124
BspCNI	CTCAG	2 cut(s)	50, 415
BspLI	GGNNCC	4 cut(s)	20, 252, 351, 435
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	54, 165
BssMI	GATC	3 cut(s)	210, 237, 419
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	118, 122, 438
BstDEI	CTNAG	2 cut(s)	37, 423
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	3 cut(s)	213, 240, 422
BstMBI	GATC	3 cut(s)	210, 237, 419
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 52, 97, 117, 433
BstNSI	RCATGY	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	87, 400
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	91, 124
BtsI	GCAGTG	2 cut(s)	22, 336
BtsIMutI	CAGTG	2 cut(s)	22, 336
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	118, 122, 438
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	19, 89, 350
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	4 cut(s)	95, 117, 247, 382
CviJI	RGCY	9 cut(s)	41, 55, 91, 100, 124, 253, 370, 413, 427
CviKI_1	RGCY	9 cut(s)	41, 55, 91, 100, 124, 253, 370, 413, 427
DdeI	CTNAG	2 cut(s)	37, 423
DpnI	GATC	3 cut(s)	212, 239, 421
DpnII	GATC	3 cut(s)	210, 237, 419
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	19, 350
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	89
FaeI	CATG	4 cut(s)	98, 120, 250, 385
FaiI	YATR	7 cut(s)	96, 118, 170, 248, 260, 383, 443
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	4 cut(s)	94, 116, 246, 381
Fnu4HI	GCNGC	2 cut(s)	101, 414
Fsp4HI	GCNGC	2 cut(s)	101, 414
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	101, 414
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	91, 124
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	98, 120, 250, 385
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	5 cut(s)	190, 299, 344, 364, 447
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	135, 193
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 52, 97, 117, 433
HpyF3I	CTNAG	2 cut(s)	37, 423
Hsp92II	CATG	4 cut(s)	98, 120, 250, 385
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	210, 237, 419
LmnI	GCTCC	2 cut(s)	192, 250
Lsp1109I	GCAGC	2 cut(s)	87, 400
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	417
MalI	GATC	3 cut(s)	212, 239, 421
MboI	GATC	3 cut(s)	210, 237, 419
MboII	GAAGA	4 cut(s)	289, 337, 381, 412
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	2 cut(s)	149, 456
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	9 cut(s)	58, 74, 80, 102, 148, 201, 340, 343, 360
MseI	TTAA	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	113, 456
MwoI	GCNNNNNNNGC	5 cut(s)	33, 52, 97, 117, 433
NdeII	GATC	3 cut(s)	210, 237, 419
NlaIII	CATG	4 cut(s)	98, 120, 250, 385
NlaIV	GGNNCC	4 cut(s)	20, 252, 351, 435
NspI	RCATGY	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	2 cut(s)	113, 456
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	102, 415
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	4 cut(s)	20, 252, 351, 435
PspPI	GGNCC	3 cut(s)	19, 89, 350
PsuI	RGATCY	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	101, 414
Sau3AI	GATC	3 cut(s)	210, 237, 419
Sau96I	GGNCC	3 cut(s)	19, 89, 350
SchI	GAGTC	1 cut(s)	223
SetI	ASST	7 cut(s)	8, 43, 69, 85, 271, 358, 415
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	2 cut(s)	19, 350
SmlI	CTYRAG	2 cut(s)	297, 344
SmoI	CTYRAG	2 cut(s)	297, 344
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	2 cut(s)	149, 456
SseBI	AGGCCT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	85, 363, 446
TasI	AATT	2 cut(s)	149, 456
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	2 cut(s)	29, 343
TseI	GCWGC	2 cut(s)	100, 413
TspDTI	ATGAA	2 cut(s)	275, 423
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	29, 343
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	19, 350
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.