Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Forward (+)

7012737 .. 7013415

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGAAGGTGGGTATCCTTGTTGAGTATTGTGAATGGCGTTGGCTGCTTAGTCATTTTCACCGAGAGAAAGATAGGTTGCCCTTGAGAAAGGCGATAAAGTGGATCAAGGCGGATGCATTGGCTCGTCTAATCGATGTTGTAGAGCCTACTGTGAATGAAGAGGTTCCGTCGTGCCCCCCAATTCAGAAGTCTGTACCAAGACGTCCGTTAGGAGCTAAGTTCGGTTCACCTTTGGAGAGACTTGCTACTATGAGGAGCGATAAGGTGGACTCTGCTGCTAAAGTGGCGCCAAGGCCTACACCTCTTGTTGCTGAGACTGGTTTGCCTGCTCAAAAAGAGGAAATTGCTCGAGTAGGCAGTTGTGAGAAATCCACCAAGCCTATTTCTGGAGAGTCTACTGAGATCTATGCGCTTTTGAAGCCAGATTTGAATAAATACCATTTTAATCACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.15

Weight (kDa)

9.43

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	205, 290
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	421, 433
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	235, 311
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	46, 278
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	292, 415
AsuHPI	GGTGA	3 cut(s)	53, 222, 443
AvaI	CYCGRG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	33, 265
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	235, 311
BfoI	RGCGCY	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	2 cut(s)	47, 279
BlsI	GCNGC	2 cut(s)	48, 280
BmeT110I	CYCGRG	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	168, 291
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	2 cut(s)	205, 290
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	306, 393
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	33, 265
BshFI	GGCC	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	235, 311
BsnI	GGCC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	105, 405
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	307, 394
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	168, 291
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	2 cut(s)	105, 405
BssNI	GRCGYC	2 cut(s)	205, 290
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	2 cut(s)	205, 290
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	4 cut(s)	50, 219, 315, 402
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	292, 415
BstKTI	GATC	2 cut(s)	108, 408
BstMAI	GTCTC	2 cut(s)	235, 311
BstMBI	GATC	2 cut(s)	105, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 287, 421
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	33, 265
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	2 cut(s)	292, 415
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	7 cut(s)	46, 125, 148, 218, 298, 382, 424
CviKI_1	RGCY	7 cut(s)	46, 125, 148, 218, 298, 382, 424
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	4 cut(s)	50, 219, 315, 402
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	2 cut(s)	107, 407
DpnII	GATC	2 cut(s)	105, 405
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	293
FaiI	YATR	2 cut(s)	254, 411
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	47, 279
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	47, 279
GlaI	GCGC	2 cut(s)	291, 414
GluI	GCNGC	2 cut(s)	47, 279
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	298
HhaI	GCGC	2 cut(s)	292, 415
Hin1I	GRCGYC	2 cut(s)	205, 290
Hin6I	GCGC	2 cut(s)	290, 413
HinP1I	GCGC	2 cut(s)	290, 413
HinfI	GANTC	2 cut(s)	272, 395
HphI	GGTGA	3 cut(s)	53, 222, 443
Hpy166II	GTNNAC	3 cut(s)	230, 271, 399
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	3 cut(s)	230, 271, 399
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 287, 421
HpyF3I	CTNAG	4 cut(s)	50, 219, 315, 402
HpySE526I	ACGT	1 cut(s)	205
Hsp92I	GRCGYC	2 cut(s)	205, 290
HspAI	GCGC	2 cut(s)	290, 413
KasI	GGCGCC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	105, 405
LmnI	GCTCC	2 cut(s)	215, 258
LpnPI	CCDG	4 cut(s)	306, 342, 375, 438
Lsp1109I	GCAGC	2 cut(s)	33, 265
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	205
MalI	GATC	2 cut(s)	107, 407
MboI	GATC	2 cut(s)	105, 405
MboII	GAAGA	2 cut(s)	16, 173
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	183, 345
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	266, 404
MnlI	CCTC	4 cut(s)	157, 249, 315, 334
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	46, 287, 421
NarI	GGCGCC	1 cut(s)	290
NdeII	GATC	2 cut(s)	105, 405
NlaIV	GGNNCC	2 cut(s)	168, 291
NsiI	ATGCAT	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	48, 280
PleI	GAGTC	2 cut(s)	266, 403
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	2 cut(s)	266, 403
PspN4I	GGNNCC	2 cut(s)	168, 291
PspXI	VCTCGAGB	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	47, 279
Sau3AI	GATC	2 cut(s)	105, 405
SchI	GAGTC	2 cut(s)	266, 404
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	9 cut(s)	12, 80, 168, 208, 220, 235, 270, 307, 456
SfaNI	GCATC	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	351
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	85, 351
SmoI	CTYRAG	2 cut(s)	85, 351
Sse9I	AATT	2 cut(s)	183, 345
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	135, 352
TasI	AATT	2 cut(s)	183, 345
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	2 cut(s)	46, 278
TspDTI	ATGAA	2 cut(s)	17, 174
TspGWI	ACGGA	2 cut(s)	159, 198
XhoI	CTCGAG	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.