Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Forward (+)

11756044 .. 11756634

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGAGCGATAAGGTGGACTCTGTTGCTAAAGTAGCGCTAAGGCTCATTCCCCTTGCTGCTGAGACTGATTCGCCTATTGAGAAAGAGAAGACTGCTCGCGTATGCAGTTGTGACAAATCCACCAAGCCTATTTTTGGGGAAGCTGCTGAGATTTGTGCGCTCTTGAAACCATATCTACTTAAAGACATGGACTCATGTGCCAAGCTTGTCAATGGCTTTAGAGGGGTTGTTTGCCCAAGTTCTTTTGCGAAGCATATGATCGAATATAGAAGAACTGCTCCACTTGCTATAATGCAGAAAACAGCGATTCTGGTAGCTGAGTCTATGCTCCTTGATCAAGAGGATACCAAGGCTGCCAAGGAAGTGGCAAAAACTGTGGCAGCTAAAGTTTATTCCTCTGCCGAGAAGATCAAGAGGTTGGAGTCTGAGCTTTTCACTTTTAAGGGGTCTAATATCTCTGCCCCCACTTCTCTGCAGGTTGAGGCCGTTTGCCAAAAGATTGTTGACTTAGAGATTAGGCTTGATACGATCCAAGTTAAGTATGAAAATGCAGATAATGAGATTGGATTTTACATACCTCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010252 GO:0010279 GO:0016874 GO:0016879 GO:0016881 GO:0042221 GO:0042592 GO:0048878 GO:0050896 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

197

Amino Acids

21.59

Weight (kDa)

7.52

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccII	CGCG	1 cut(s)	102
AclWI	GGATC	1 cut(s)	526
AfeI	AGCGCT	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	5 cut(s)	146, 208, 320, 386, 433
AluI	AGCT	5 cut(s)	146, 208, 320, 386, 433
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	526
Aor51HI	AGCGCT	1 cut(s)	39
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	59, 146, 356, 383
AspLEI	GCGC	2 cut(s)	40, 163
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	4 cut(s)	46, 133, 343, 395
BceAI	ACGGC	1 cut(s)	473
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	60, 147, 357, 384
BlsI	GCNGC	4 cut(s)	61, 148, 358, 385
BpiI	GAAGAC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	351, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	351, 360
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	4 cut(s)	54, 141, 312, 420
BseXI	GCAGC	4 cut(s)	46, 133, 343, 395
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	261, 337, 411, 531
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	4 cut(s)	55, 142, 313, 421
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	351, 360
BssMI	GATC	4 cut(s)	261, 337, 411, 531
BssT1I	CCWWGG	2 cut(s)	351, 360
Bst4CI	ACNGT	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	7 cut(s)	41, 63, 150, 321, 429, 511, 582
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 163
BstKTI	GATC	4 cut(s)	264, 340, 414, 534
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	4 cut(s)	261, 337, 411, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 287
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	4 cut(s)	46, 133, 343, 395
BstV2I	GAAGAC	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	488
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	2 cut(s)	40, 163
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	2 cut(s)	190, 198
DdeI	CTNAG	7 cut(s)	41, 63, 150, 321, 429, 511, 582
DpnI	GATC	4 cut(s)	263, 339, 413, 533
DpnII	GATC	4 cut(s)	261, 337, 411, 531
Eco130I	CCWWGG	2 cut(s)	351, 360
Eco47III	AGCGCT	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	351, 360
ErhI	CCWWGG	2 cut(s)	351, 360
FaeI	CATG	2 cut(s)	193, 201
FatI	CATG	2 cut(s)	189, 197
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	60, 147, 357, 384
Fsp4HI	GCNGC	4 cut(s)	60, 147, 357, 384
GlaI	GCGC	2 cut(s)	39, 162
GluI	GCNGC	4 cut(s)	60, 147, 357, 384
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	40, 163
Hin1II	CATG	2 cut(s)	193, 201
Hin6I	GCGC	2 cut(s)	38, 161
HinP1I	GCGC	2 cut(s)	38, 161
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	6 cut(s)	20, 71, 194, 310, 323, 425
Hpy166II	GTNNAC	2 cut(s)	19, 508
Hpy188I	TCNGA	2 cut(s)	430, 585
Hpy188III	TCNNGA	3 cut(s)	166, 341, 415
Hpy8I	GTNNAC	2 cut(s)	19, 508
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	108, 298, 478, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 287
HpyF3I	CTNAG	7 cut(s)	41, 63, 150, 321, 429, 511, 582
Hsp92II	CATG	2 cut(s)	193, 201
HspAI	GCGC	2 cut(s)	38, 161
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	261, 337, 411, 531
LmnI	GCTCC	2 cut(s)	286, 336
LpnPI	CCDG	2 cut(s)	299, 464
Lsp1109I	GCAGC	4 cut(s)	46, 133, 343, 395
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	263, 339, 413, 533
MboI	GATC	4 cut(s)	261, 337, 411, 531
MboII	GAAGA	4 cut(s)	16, 103, 285, 421
MlyI	GAGTC	4 cut(s)	14, 188, 332, 434
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	218, 337, 409, 411, 478, 591
MseI	TTAA	4 cut(s)	183, 444, 540, 589
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	35, 287
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	4 cut(s)	261, 337, 411, 531
NlaIII	CATG	2 cut(s)	193, 201
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	71, 310
PkrI	GCNGC	4 cut(s)	61, 148, 358, 385
PleI	GAGTC	4 cut(s)	14, 188, 331, 433
PpsI	GAGTC	4 cut(s)	14, 188, 331, 433
PstI	CTGCAG	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	183, 444, 540, 589
SatI	GCNGC	4 cut(s)	60, 147, 357, 384
Sau3AI	GATC	4 cut(s)	261, 337, 411, 531
SchI	GAGTC	4 cut(s)	14, 188, 332, 434
SetI	ASST	9 cut(s)	18, 148, 210, 322, 388, 422, 435, 483, 583
SfcI	CTRYAG	1 cut(s)	476
StyI	CCWWGG	2 cut(s)	351, 360
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	71, 310
Tru1I	TTAA	4 cut(s)	183, 444, 540, 589
Tru9I	TTAA	4 cut(s)	183, 444, 540, 589
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	4 cut(s)	59, 146, 356, 383
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	17, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.