Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Forward (+)

8153067 .. 8154168

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTGGTTAAGAAAAAACTGAAGACTTCTTTCGCTGCTCGTGAGGGTCCACCTGCTATCGAGAGGCCTGTGATTGACATAACTTCTTACAATGGGAAGAAAAATAAGGCTGCTAGATCTGAGCCTGTGGCGCCTGCTACGTTGAGAATGGCTAATTCGAGAGAACCGGGTCCTGCTAGATCTGAGCCTGTGGCGCCTGCTACGTTTTTGAGTCTATCGGTAGAACCGGGTCCTAAAAACCCATATAATTCATGGGTTCCACTTTACAAACAGCCTATTGAGTTTGATAGTGATCATGTACATCGTCATCTTCTCTCAGTGATTTACATCTTCAGCTGCTCATACGAGTTTGGTTCCTCCAAATCGCCCACGCCTATCAAAATTCGTTTCAATCATGTTGGATTTGTTATAAATTGGGCTATTTGGTTTGATTCGTTGGGTGAAGACTATGATTTTTACAATGGTTATGCAATCACAATTGGGTTTGGGATCCGGAAACATAGTAGTAAAAAGGGCAGTGGTGATGAGGGGTTGGTAATGAAGGAATTTGTTTGTTGTAAACAAAGAAAAAAGGTGGATGTTAATCTAAACCCAATTGGAAAAGGTGATAAGGCAGACGCTAGAAGTGACTGTAGGGCGAAAGTTGCACTGTTGAAGCCAAATGGTCACAACAAGTTTGTTGTACCTGTTTTCAAAGAACAAAACTACCATGTGGCAAGCGGAGGAATCAGAAATAGTAGTTGCATCCCCAAGGATATGTATAATGTTGAATGGAATCTAATGAGCATGATGCAGAAATGCTTAACGAGTATTTTGAGGATGAGAAAGAGAAAAACAAGTCATTCTATTTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

286

Amino Acids

32.04

Weight (kDa)

9.76

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	151 - 237	2.3e-10	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	2 cut(s)	130, 193
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	2 cut(s)	484, 497
AcsI	RAATTY	2 cut(s)	381, 545
AcuI	CTGAAG	2 cut(s)	41, 316
AcyI	GRCGYC	2 cut(s)	131, 194
AfaI	GTAC	2 cut(s)	300, 684
AgsI	TTSAA	5 cut(s)	391, 655, 694, 770, 852
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AlwI	GGATC	2 cut(s)	484, 497
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	35, 110, 336
ApoI	RAATTY	2 cut(s)	381, 545
AspLEI	GCGC	2 cut(s)	133, 196
AspS9I	GGNCC	3 cut(s)	47, 170, 230
AsuC2I	CCSGG	2 cut(s)	168, 228
AsuHPI	GGTGA	3 cut(s)	452, 533, 617
AvaII	GGWCC	3 cut(s)	47, 170, 230
BamHI	GGATCC	1 cut(s)	489
BanI	GGYRCC	2 cut(s)	130, 193
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	29, 450
BbvI	GCAGC	3 cut(s)	22, 97, 323
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	2 cut(s)	168, 228
BfaI	CTAG	3 cut(s)	114, 177, 621
BfmI	CTRYAG	1 cut(s)	631
BfoI	RGCGCY	2 cut(s)	134, 197
BfuAI	ACCTGC	1 cut(s)	61
BglII	AGATCT	2 cut(s)	116, 179
BisI	GCNGC	3 cut(s)	36, 111, 337
BlsI	GCNGC	3 cut(s)	37, 112, 338
Bme1390I	CCNGG	2 cut(s)	168, 228
Bme18I	GGWCC	3 cut(s)	47, 170, 230
BmgT120I	GGNCC	3 cut(s)	47, 170, 230
BmiI	GGNNCC	8 cut(s)	48, 132, 171, 195, 231, 258, 355, 491
BmrFI	CCNGG	2 cut(s)	168, 228
BmsI	GCATC	2 cut(s)	753, 780
BpiI	GAAGAC	2 cut(s)	29, 450
BpuMI	CCSGG	2 cut(s)	168, 228
BsaBI	GATNNNNATC	3 cut(s)	291, 326, 582
BsaHI	GRCGYC	2 cut(s)	131, 194
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	1 cut(s)	492
Bse8I	GATNNNNATC	3 cut(s)	291, 326, 582
BseAI	TCCGGA	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	3 cut(s)	583, 744, 825
BseJI	GATNNNNATC	3 cut(s)	291, 326, 582
BseMII	CTCAG	3 cut(s)	111, 174, 330
BseXI	GCAGC	3 cut(s)	22, 97, 323
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	130, 193
BsiSI	CCGG	3 cut(s)	167, 227, 493
BsnI	GGCC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	116, 179, 292, 489
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	112, 175, 329
BspEI	TCCGGA	1 cut(s)	492
BspLI	GGNNCC	8 cut(s)	48, 132, 171, 195, 231, 258, 355, 491
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	484, 497
BspT107I	GGYRCC	2 cut(s)	130, 193
BsrGI	TGTACA	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	4 cut(s)	116, 179, 292, 489
BssNI	GRCGYC	2 cut(s)	131, 194
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	632, 651
BstACI	GRCGYC	2 cut(s)	131, 194
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	135, 198, 718
BstDEI	CTNAG	3 cut(s)	120, 183, 316
BstF5I	GGATG	3 cut(s)	583, 744, 825
BstH2I	RGCGCY	2 cut(s)	134, 197
BstHHI	GCGC	2 cut(s)	133, 196
BstKTI	GATC	4 cut(s)	119, 182, 295, 492
BstMBI	GATC	4 cut(s)	116, 179, 292, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 193, 644
BstSCI	CCNGG	2 cut(s)	166, 226
BstSFI	CTRYAG	1 cut(s)	631
BstV1I	GCAGC	3 cut(s)	22, 97, 323
BstV2I	GAAGAC	2 cut(s)	29, 450
BstX2I	RGATCY	3 cut(s)	116, 179, 489
BstYI	RGATCY	3 cut(s)	116, 179, 489
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	583, 744, 825
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	324, 523, 647
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	135, 198, 718
CfoI	GCGC	2 cut(s)	133, 196
Cfr13I	GGNCC	3 cut(s)	47, 170, 230
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	299, 683
CviAII	CATG	5 cut(s)	252, 296, 395, 710, 787
CviJI	RGCY	9 cut(s)	67, 110, 124, 152, 187, 274, 336, 419, 658
CviKI_1	RGCY	9 cut(s)	67, 110, 124, 152, 187, 274, 336, 419, 658
CviQI	GTAC	2 cut(s)	299, 683
DdeI	CTNAG	3 cut(s)	120, 183, 316
DinI	GGCGCC	2 cut(s)	132, 195
DpnI	GATC	4 cut(s)	118, 181, 294, 491
DpnII	GATC	4 cut(s)	116, 179, 292, 489
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	67
Eco47I	GGWCC	3 cut(s)	47, 170, 230
Eco57I	CTGAAG	2 cut(s)	41, 316
EcoO109I	RGGNCCY	2 cut(s)	170, 230
EcoT14I	CCWWGG	1 cut(s)	750
EgeI	GGCGCC	2 cut(s)	132, 195
EheI	GGCGCC	2 cut(s)	132, 195
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	5 cut(s)	255, 299, 398, 713, 790
FatI	CATG	5 cut(s)	251, 295, 394, 709, 786
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	36, 111, 337
FokI	GGATG	3 cut(s)	590, 731, 832
Fsp4HI	GCNGC	3 cut(s)	36, 111, 337
FspBI	CTAG	3 cut(s)	114, 177, 621
GlaI	GCGC	2 cut(s)	132, 195
GluI	GCNGC	3 cut(s)	36, 111, 337
HaeII	RGCGCY	2 cut(s)	134, 197
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	3 cut(s)	167, 227, 493
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	133, 196
Hin1I	GRCGYC	2 cut(s)	131, 194
Hin1II	CATG	5 cut(s)	255, 299, 398, 713, 790
Hin6I	GCGC	2 cut(s)	131, 194
HinP1I	GCGC	2 cut(s)	131, 194
HinfI	GANTC	4 cut(s)	211, 431, 726, 775
HpaII	CCGG	3 cut(s)	167, 227, 493
HphI	GGTGA	3 cut(s)	452, 533, 617
Hpy166II	GTNNAC	2 cut(s)	50, 560
Hpy188I	TCNGA	3 cut(s)	121, 184, 731
Hpy188III	TCNNGA	5 cut(s)	41, 61, 159, 493, 852
Hpy8I	GTNNAC	2 cut(s)	50, 560
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	2 cut(s)	632, 651
HpyCH4IV	ACGT	2 cut(s)	140, 203
HpyCH4V	TGCA	4 cut(s)	470, 647, 744, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 193, 644
HpyF3I	CTNAG	3 cut(s)	120, 183, 316
HpySE526I	ACGT	2 cut(s)	140, 203
Hsp92I	GRCGYC	2 cut(s)	131, 194
Hsp92II	CATG	5 cut(s)	255, 299, 398, 713, 790
HspAI	GCGC	2 cut(s)	131, 194
KasI	GGCGCC	2 cut(s)	130, 193
Kpn2I	TCCGGA	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	116, 179, 292, 489
Lsp1109I	GCAGC	3 cut(s)	22, 97, 323
LweI	GCATC	2 cut(s)	753, 780
MaeI	CTAG	3 cut(s)	114, 177, 621
MaeII	ACGT	2 cut(s)	140, 203
MaeIII	GTNAC	2 cut(s)	626, 665
MalI	GATC	4 cut(s)	118, 181, 294, 491
MboI	GATC	4 cut(s)	116, 179, 292, 489
MboII	GAAGA	5 cut(s)	34, 109, 302, 322, 455
MfeI	CAATTG	2 cut(s)	477, 594
MflI	RGATCY	3 cut(s)	116, 179, 489
MluCI	AATT	7 cut(s)	154, 247, 381, 412, 477, 545, 594
Mly113I	GGCGCC	2 cut(s)	131, 194
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	6 cut(s)	37, 57, 367, 520, 716, 810
MroI	TCCGGA	1 cut(s)	492
MseI	TTAA	3 cut(s)	9, 582, 803
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	3 cut(s)	167, 227, 493
MspR9I	CCNGG	2 cut(s)	168, 228
MunI	CAATTG	2 cut(s)	477, 594
MwoI	GCNNNNNNNGC	3 cut(s)	130, 193, 644
NarI	GGCGCC	2 cut(s)	131, 194
NciI	CCSGG	2 cut(s)	168, 228
NdeII	GATC	4 cut(s)	116, 179, 292, 489
NlaIII	CATG	5 cut(s)	255, 299, 398, 713, 790
NlaIV	GGNNCC	8 cut(s)	48, 132, 171, 195, 231, 258, 355, 491
NmuCI	GTSAC	2 cut(s)	626, 665
PaqCI	CACCTGC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	431, 726, 775
PkrI	GCNGC	3 cut(s)	37, 112, 338
PleI	GAGTC	1 cut(s)	219
PluTI	GGCGCC	2 cut(s)	134, 197
PpsI	GAGTC	1 cut(s)	219
PpuMI	RGGWCCY	2 cut(s)	170, 230
PsiI	TTATAA	1 cut(s)	410
Psp5II	RGGWCCY	2 cut(s)	170, 230
PspN4I	GGNNCC	8 cut(s)	48, 132, 171, 195, 231, 258, 355, 491
PspPI	GGNCC	3 cut(s)	47, 170, 230
PspPPI	RGGWCCY	2 cut(s)	170, 230
PsuI	RGATCY	3 cut(s)	116, 179, 489
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	2 cut(s)	300, 684
RsaNI	GTAC	2 cut(s)	299, 683
SaqAI	TTAA	3 cut(s)	9, 582, 803
SatI	GCNGC	3 cut(s)	36, 111, 337
Sau3AI	GATC	4 cut(s)	116, 179, 292, 489
Sau96I	GGNCC	3 cut(s)	47, 170, 230
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	168, 228
SetI	ASST	7 cut(s)	55, 143, 206, 338, 576, 607, 688
SfaNI	GCATC	2 cut(s)	753, 780
SfcI	CTRYAG	1 cut(s)	631
SfoI	GGCGCC	2 cut(s)	132, 195
SinI	GGWCC	3 cut(s)	47, 170, 230
Sse9I	AATT	7 cut(s)	154, 247, 381, 412, 477, 545, 594
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	720
SspDI	GGCGCC	2 cut(s)	130, 193
SspMI	CTAG	3 cut(s)	114, 177, 621
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	166, 226
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	632, 651
TaiI	ACGT	2 cut(s)	143, 206
TaqI	TCGA	2 cut(s)	60, 158
TasI	AATT	7 cut(s)	154, 247, 381, 412, 477, 545, 594
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	3 cut(s)	431, 726, 775
Tru1I	TTAA	3 cut(s)	9, 582, 803
Tru9I	TTAA	3 cut(s)	9, 582, 803
TscAI	CASTG	3 cut(s)	324, 523, 654
TseFI	GTSAC	2 cut(s)	626, 665
TseI	GCWGC	3 cut(s)	35, 110, 336
Tsp45I	GTSAC	2 cut(s)	626, 665
TspDTI	ATGAA	2 cut(s)	240, 554
TspRI	CASTG	3 cut(s)	324, 523, 654
VpaK11BI	GGWCC	3 cut(s)	47, 170, 230
XapI	RAATTY	2 cut(s)	381, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	249
XspI	CTAG	3 cut(s)	114, 177, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.