Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Forward (+)

9857055 .. 9857807

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTGGTTAAGAAAAAGTCAAAGGCTTCTTCCGCTACTCGTGAGGGTCCGCCTGCTGCCGATAAGCTTGTGATTGACTTGAATTCTTCCAAATGGAAGAAAGATGAGGCTGCTATATCTAATCTGGTGATGCCTGCCATGTCGAATGTAGCTAGTACAATTGCTGATAGGATTGCTCAACGTAGAGTTTCTGTCGTGCCCCCAGTTCCGAAATCCATGCCAAGACATCAGTTAGGAGCTAAGTTTTGTTCACCTTCGAATAGGTTTGCTACTATGAAGAGCAATAAGGTAGACTTTGTTGCTAAAATGGTGCCAATGCCTATTCCTCTTACTGCTGAGACTGGTTCGCATGTTAAGAAAGAGGAGGCTGCTCGCGTGCACAACTATAAGAAATCCACCAAGCTTGTTTCTGGAAATGCTACTAAGATCTATGCACTTTTGAAGCTAGATTTGCTTGAAGACATGGATGCATGTGCCAAGCTTGTTGATGACAAAACGGTGATTCTGGTAGCTGAGTCTATGCTCTTTGATCAAGAGAATACCAAGGCTGCCAAGGAAATGGCAACGACTATGGAAGCTGAGGCTTATTCTTCTACCAAGAAGATCAAGAGGTTGAAGTCTGAGCTTGTCGTATTGAGGGGGTCCAATATCTCTGCCCTCACTTCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

224

Amino Acids

24.32

Weight (kDa)

9.76

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	375
AciI	CCGC	2 cut(s)	33, 50
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	82, 442, 458, 616
AluBI	AGCT	9 cut(s)	67, 152, 239, 403, 445, 481, 512, 578, 625
AluI	AGCT	9 cut(s)	67, 152, 239, 403, 445, 481, 512, 578, 625
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	377
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	56, 110, 368, 548
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	47, 642
AsuHPI	GGTGA	3 cut(s)	139, 243, 511
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	47, 642
BaeGI	GKGCMC	2 cut(s)	201, 381
BanI	GGYRCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	43, 97, 355, 535
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	153, 446
BfmI	CTRYAG	1 cut(s)	668
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	57, 111, 369, 549
BlsI	GCNGC	4 cut(s)	58, 112, 370, 550
Bme18I	GGWCC	2 cut(s)	47, 642
BmgT120I	GGNCC	2 cut(s)	47, 642
BmiI	GGNNCC	3 cut(s)	48, 312, 643
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	2 cut(s)	120, 457
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	543, 552
Bse1I	ACTGG	2 cut(s)	203, 346
BseDI	CCNNGG	2 cut(s)	543, 552
BseGI	GGATG	1 cut(s)	472
BseMII	CTCAG	4 cut(s)	327, 504, 570, 612
BseNI	ACTGG	2 cut(s)	203, 346
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	2 cut(s)	201, 381
BseXI	GCAGC	4 cut(s)	43, 97, 355, 535
Bsh1236I	CGCG	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	201, 381
Bsp143I	GATC	3 cut(s)	426, 529, 603
BspACI	CCGC	2 cut(s)	33, 50
BspCNI	CTCAG	4 cut(s)	328, 505, 571, 613
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	48, 312, 643
BspQI	GCTCTTC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	203, 346
BssECI	CCNNGG	2 cut(s)	543, 552
BssMI	GATC	3 cut(s)	426, 529, 603
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	543, 552
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	54, 135, 373, 377
BstDEI	CTNAG	6 cut(s)	240, 336, 423, 513, 579, 621
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	3 cut(s)	429, 532, 606
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	3 cut(s)	426, 529, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 451
BstNSI	RCATGY	2 cut(s)	353, 474
BstSFI	CTRYAG	1 cut(s)	668
BstSLI	GKGCMC	2 cut(s)	201, 381
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	43, 97, 355, 535
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	4 cut(s)	54, 135, 373, 377
Cfr13I	GGNCC	2 cut(s)	47, 642
Csp6I	GTAC	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	5 cut(s)	139, 217, 350, 463, 471
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	6 cut(s)	240, 336, 423, 513, 579, 621
DpnI	GATC	3 cut(s)	428, 531, 605
DpnII	GATC	3 cut(s)	426, 529, 603
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	543, 552
Eco47I	GGWCC	2 cut(s)	47, 642
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	543, 552
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	543, 552
FaeI	CATG	5 cut(s)	142, 220, 353, 466, 474
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	5 cut(s)	138, 216, 349, 462, 470
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	57, 111, 369, 549
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	57, 111, 369, 549
FspBI	CTAG	2 cut(s)	153, 446
GluI	GCNGC	4 cut(s)	57, 111, 369, 549
Hin1II	CATG	5 cut(s)	142, 220, 353, 466, 474
HindIII	AAGCTT	3 cut(s)	65, 401, 479
HinfI	GANTC	2 cut(s)	502, 515
HphI	GGTGA	3 cut(s)	139, 243, 511
Hpy166II	GTNNAC	3 cut(s)	251, 292, 379
Hpy188I	TCNGA	2 cut(s)	210, 622
Hpy188III	TCNNGA	4 cut(s)	41, 411, 533, 607
Hpy8I	GTNNAC	3 cut(s)	251, 292, 379
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	379, 434, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 451
HpyF3I	CTNAG	6 cut(s)	240, 336, 423, 513, 579, 621
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	142, 220, 353, 466, 474
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	426, 529, 603
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	66, 110, 147, 216, 327, 396, 491
Lsp1109I	GCAGC	4 cut(s)	43, 97, 355, 535
LweI	GCATC	2 cut(s)	120, 457
MaeI	CTAG	2 cut(s)	153, 446
MaeII	ACGT	1 cut(s)	181
MalI	GATC	3 cut(s)	428, 531, 605
MboI	GATC	3 cut(s)	426, 529, 603
MboII	GAAGA	7 cut(s)	21, 78, 109, 289, 470, 582, 613
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	201, 381
MluCI	AATT	2 cut(s)	82, 159
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	9 cut(s)	37, 100, 336, 355, 358, 574, 603, 630, 668
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	2 cut(s)	9, 354
MunI	CAATTG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	32, 451
NdeII	GATC	3 cut(s)	426, 529, 603
NlaIII	CATG	5 cut(s)	142, 220, 353, 466, 474
NlaIV	GGNNCC	3 cut(s)	48, 312, 643
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	2 cut(s)	353, 474
NspV	TTCGAA	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	4 cut(s)	58, 112, 370, 550
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PspN4I	GGNNCC	3 cut(s)	48, 312, 643
PspPI	GGNCC	2 cut(s)	47, 642
PsuI	RGATCY	1 cut(s)	426
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	9, 354
SatI	GCNGC	4 cut(s)	57, 111, 369, 549
Sau3AI	GATC	3 cut(s)	426, 529, 603
Sau96I	GGNCC	2 cut(s)	47, 642
SchI	GAGTC	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	201, 381
SfaNI	GCATC	2 cut(s)	120, 457
SfcI	CTRYAG	1 cut(s)	668
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	2 cut(s)	47, 642
Sse9I	AATT	2 cut(s)	82, 159
SsiI	CCGC	2 cut(s)	33, 50
SspMI	CTAG	2 cut(s)	153, 446
StyI	CCWWGG	2 cut(s)	543, 552
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	143, 257
TasI	AATT	2 cut(s)	82, 159
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	9, 354
Tru9I	TTAA	2 cut(s)	9, 354
TseI	GCWGC	4 cut(s)	56, 110, 368, 548
TspDTI	ATGAA	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	47, 642
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	2 cut(s)	353, 474
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	2 cut(s)	153, 446
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.