Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Reverse (-)

13683635 .. 13684447

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCAGAAAACGACGATTCTGGCAGCCAAATCTATGCTTCTTGATCAAGAGAACACCAAGGCTGTTAAGAACGTGGCAAGAACTGTGGCAGTCGAAGCTTACTCCTTGGTCGAGAAAGTCAAGAAATTAGAATATGGACTTGCTGCTTTAAAAGGGTCTAATATCTCTGCCCCCACTTCTCTGCAGCTTGAGACCGCTCTCCAAGAGATCATGAATTTGAAGACTAGGCTTCATACGATCCAAGTAAAGTACAAGAGTGTAGAGAAGGAGATCGAGTGTTACATACCTCAGATTCAAGATCTTAAGCATGCCATCTTTGAATTCTGCTCCACTGCTTATGCAAAGGATGAAGAATTGATCGCTGCTTACAACCAAATGATCCATTTCAAGAAGGTTGTTGATAGGCTTGAGCCAAAAGTGTTGGAGCTCCAAGTCGGAGAGGTTGGTGCCCAGGCTGGGGCAGCTGAGGGTGAAACACCGGATGGTGCCGCTGCTGAGGGCATCACGGCTGCTAAAGGTGTGGTGACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EloA-BP1

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

5.73

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	446, 485
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	2 cut(s)	195, 489
AclWI	GGATC	2 cut(s)	232, 373
AcsI	RAATTY	2 cut(s)	214, 320
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	456, 457
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	220, 296, 320, 388
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	4 cut(s)	98, 187, 427, 464
AluI	AGCT	4 cut(s)	98, 187, 427, 464
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	232, 373
ApeKI	GCWGC	7 cut(s)	23, 143, 184, 362, 461, 491, 509
ApoI	RAATTY	2 cut(s)	214, 320
AsuHPI	GGTGA	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	451
BanI	GGYRCC	2 cut(s)	446, 485
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	2 cut(s)	465, 495
BbvI	GCAGC	7 cut(s)	35, 130, 196, 349, 473, 478, 496
BccI	CCATC	2 cut(s)	320, 476
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	8 cut(s)	24, 144, 185, 363, 462, 489, 492, 510
BlsI	GCNGC	8 cut(s)	25, 145, 186, 364, 463, 490, 493, 511
Bme1390I	CCNGG	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	448, 487
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	227
Bpu10I	CCTNAGC	2 cut(s)	465, 495
BpuEI	CTTGAG	2 cut(s)	209, 428
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	57, 105, 450
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 457
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	57, 105, 450
BseGI	GGATG	2 cut(s)	352, 487
BseLI	CCNNNNNNNGG	2 cut(s)	456, 457
BseMII	CTCAG	3 cut(s)	302, 456, 486
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	7 cut(s)	35, 130, 196, 349, 473, 478, 496
BseYI	CCCAGC	1 cut(s)	455
BshNI	GGYRCC	2 cut(s)	446, 485
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	456, 457
BsmAI	GTCTC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	429, 451
Bsp143I	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
BspACI	CCGC	2 cut(s)	195, 489
BspCNI	CTCAG	3 cut(s)	301, 457, 487
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	448, 487
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	232, 373
BspT107I	GGYRCC	2 cut(s)	446, 485
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	57, 105, 450
BssMI	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
BssT1I	CCWWGG	2 cut(s)	57, 105
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	288, 465, 495
BstEII	GGTNACC	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	352, 487
BstKTI	GATC	7 cut(s)	46, 210, 240, 273, 301, 360, 381
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 461
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	7 cut(s)	35, 130, 196, 349, 473, 478, 496
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	352, 487
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	2 cut(s)	211, 308
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	288, 465, 495
DpnI	GATC	7 cut(s)	45, 209, 239, 272, 300, 359, 380
DpnII	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
DraI	TTTAAA	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	57, 105
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	427
Eco91I	GGTNACC	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	57, 105
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	57, 105
FaeI	CATG	2 cut(s)	214, 311
FaiI	YATR	7 cut(s)	35, 135, 212, 234, 284, 309, 339
FatI	CATG	2 cut(s)	210, 307
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	8 cut(s)	24, 144, 185, 363, 462, 489, 492, 510
FokI	GGATG	2 cut(s)	359, 494
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	8 cut(s)	24, 144, 185, 363, 462, 489, 492, 510
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	8 cut(s)	24, 144, 185, 363, 462, 489, 492, 510
GsaI	CCCAGC	1 cut(s)	459
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	2 cut(s)	214, 311
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	16, 292
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	291, 437
Hpy188III	TCNNGA	7 cut(s)	41, 47, 112, 121, 211, 296, 388
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	259, 385
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	4, 184, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 461
HpyF3I	CTNAG	3 cut(s)	288, 465, 495
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	214, 311
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
LmnI	GCTCC	3 cut(s)	332, 424, 432
LpnPI	CCDG	5 cut(s)	5, 437, 441, 464, 492
Lsp1109I	GCAGC	7 cut(s)	35, 130, 196, 349, 473, 478, 496
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	278, 523
MalI	GATC	7 cut(s)	45, 209, 239, 272, 300, 359, 380
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
MboII	GAAGA	2 cut(s)	232, 362
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	429, 451
MluCI	AATT	4 cut(s)	125, 214, 320, 353
MmeI	TCCRAC	2 cut(s)	402, 415
MnlI	CCTC	4 cut(s)	297, 433, 460, 490
MseI	TTAA	3 cut(s)	66, 149, 303
MspA1I	CMGCKG	2 cut(s)	464, 491
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	95, 461
NdeII	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
NlaIII	CATG	2 cut(s)	214, 311
NlaIV	GGNNCC	2 cut(s)	448, 487
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	16, 292
PkrI	GCNGC	8 cut(s)	25, 145, 186, 364, 463, 490, 493, 511
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	448, 487
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	66, 149, 303
SatI	GCNGC	8 cut(s)	24, 144, 185, 363, 462, 489, 492, 510
Sau3AI	GATC	7 cut(s)	43, 207, 237, 270, 298, 357, 378
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	2 cut(s)	429, 451
SetI	ASST	9 cut(s)	75, 100, 189, 289, 396, 429, 444, 466, 520
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	182
SmlI	CTYRAG	3 cut(s)	188, 302, 407
SmoI	CTYRAG	3 cut(s)	188, 302, 407
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	4 cut(s)	125, 214, 320, 353
SsiI	CCGC	2 cut(s)	195, 489
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	57, 105
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	93, 111, 273
TasI	AATT	4 cut(s)	125, 214, 320, 353
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	16, 292
Tru1I	TTAA	3 cut(s)	66, 149, 303
Tru9I	TTAA	3 cut(s)	66, 149, 303
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	7 cut(s)	23, 143, 184, 362, 461, 491, 509
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	221, 227, 363
TspRI	CASTG	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	2 cut(s)	214, 320
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.