Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005203

Physical Location & Seq

Genomic Coordinates Forward (+)

22766378 .. 22766692

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACTTCTTCCAATAGGAAGAAAAATGAGGCTACTAGATCTGAGCTTGTGACATCGGCTATGTTGAGAATGGCTAATTCGATTGTTGATAGTATTGCCCAGTGTGAAGGTCTTGTCATGTCCCTAGTGCTGAAGTCTGTGCCAAGACGTTTGTTGGGAGCTAAGTTCGGTTCTCATTCGGAAAAGCTTGCTATTATGAAGAGCGATAAGGTAGACTCTGCTGCTAAAGTGGCACTAAGGCCCATTCCCTCTGCTGCTGAGACTGATTCGCCTGATGGGAAGGAGGAAACTGCTCGTGTAGGCAGTTGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.09

Weight (kDa)

9.06

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005203)

Species	Orthologous Gene IDs
malus_domestica	MD09G1018300.v1.1 MD15G1351900.v1.1
pyrus_communis	pycom01g01670 pycom01g02670 pycom01g06610 pycom02g17260 pycom03g10760 pycom04g07500 pycom04g07720 pycom04g09270 pycom05g08140 pycom05g09680 pycom06g08870 pycom06g09050 pycom07g06460 pycom07g12370 pycom10g06120 pycom11g13350 pycom13g13860 pycom13g17300 pycom13g17590 pycom13g23100 pycom13g23430 pycom13g23810 pycom14g06700 pycom15g26510 pycom15g27360 pycom15g35060 pycom15g35080 pycom16g15840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	46, 161, 187
AluI	AGCT	3 cut(s)	46, 161, 187
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	221, 254
AspS9I	GGNCC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	208, 241
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	36, 125
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	2 cut(s)	222, 255
BlsI	GCNGC	2 cut(s)	223, 256
BmgT120I	GGNCC	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	33, 249
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	208, 241
BshFI	GGCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	34, 250
BspQI	GCTCTTC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	4 cut(s)	42, 162, 236, 258
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	208, 241
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	240
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	7 cut(s)	32, 46, 59, 74, 161, 187, 241
CviKI_1	RGCY	7 cut(s)	32, 46, 59, 74, 161, 187, 241
DdeI	CTNAG	4 cut(s)	42, 162, 236, 258
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	152
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	62, 119, 197
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	222, 255
Fsp4HI	GCNGC	2 cut(s)	222, 255
FspBI	CTAG	2 cut(s)	36, 125
GluI	GCNGC	2 cut(s)	222, 255
HaeIII	GGCC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	2 cut(s)	215, 266
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	43, 181
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	101, 274
HpyCH4IV	ACGT	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	4 cut(s)	42, 162, 236, 258
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	38
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	2 cut(s)	113, 285
Lsp1109I	GCAGC	2 cut(s)	208, 241
MaeI	CTAG	2 cut(s)	36, 125
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	31, 211
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	3 cut(s)	22, 259, 277
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	223, 256
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	222, 255
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	209
SetI	ASST	6 cut(s)	48, 112, 151, 163, 189, 213
Sse9I	AATT	1 cut(s)	76
SspMI	CTAG	2 cut(s)	36, 125
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	80
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	221, 254
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	36, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.