pycom04g09270

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0005203
Physical Location & Seq
Reverse (-)
11760553 .. 11760900
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09270.1

Sequence Viewer

Length: 348 bp
ATGGATATATGTGCTAAGTTTTTTGATGGCGTCAAAGGAGTTGTTGGCCCAAGTTCCTTTGTGAAGCATACGATCGAGTATAGGAGGATTGCTCTGCTAGCCATGATGCAAAAAATGGCGATTCTGGTAGCCGAGTCTATGGTTCTTGATCAAGAAGATACCAAGGCTGCTAAGGAGGTGGCAAAAACTGTGGCAGCCGAAACTTACTCCTCGGTCGAGAAAGTCAAGAAATTGGAATTGGAGCTTGATGCTTTAGAGGGGTCTAATATCTCCGCCTCGACTTCTCTGCAGCTTGAGACCACTCGCCAAAAGATCATGGATTTGAAGACTAGGCTTGACGCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

5.85

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 341
AciI CCGC 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 2 cut(s) 244, 292
AluI AGCT 2 cut(s) 244, 292
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 167, 194, 289
AspS9I GGNCC 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 154, 206, 301
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 98, 330, 346
BfmI CTRYAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 168, 195, 290
BlsI GCNGC 3 cut(s) 169, 196, 291
BmgT120I GGNCC 1 cut(s) 47
BmsI GCATC 2 cut(s) 96, 238
BmtI GCTAGC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 162, 210
BseDI CCNNGG 2 cut(s) 162, 210
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 154, 206, 301
Bsh1236I CGCG 1 cut(s) 341
Bsh1285I CGRYCG 2 cut(s) 75, 216
BshFI GGCC 1 cut(s) 48
BsiEI CGRYCG 2 cut(s) 75, 216
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 290
Bsp143I GATC 4 cut(s) 72, 148, 312, 342
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 48
BspFNI CGCG 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 162, 210
BssMI GATC 4 cut(s) 72, 148, 312, 342
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 15, 171
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 4 cut(s) 75, 151, 315, 345
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 4 cut(s) 72, 148, 312, 342
BstMCI CGRYCG 2 cut(s) 75, 216
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 287
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 154, 206, 301
BstV2I GAAGAC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 2 cut(s) 103, 316
CviJI RGCY 8 cut(s) 48, 101, 131, 167, 197, 244, 292, 334
CviKI_1 RGCY 8 cut(s) 48, 101, 131, 167, 197, 244, 292, 334
DdeI CTNAG 2 cut(s) 15, 171
DpnI GATC 4 cut(s) 74, 150, 314, 344
DpnII GATC 4 cut(s) 72, 148, 312, 342
EciI GGCGGA 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 106, 319
FaiI YATR 7 cut(s) 8, 10, 69, 81, 104, 140, 317
FatI CATG 2 cut(s) 102, 315
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 168, 195, 290
Fsp4HI GCNGC 3 cut(s) 168, 195, 290
FspBI CTAG 3 cut(s) 98, 330, 346
GluI GCNGC 3 cut(s) 168, 195, 290
HaeIII GGCC 1 cut(s) 48
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 106, 319
HinfI GANTC 2 cut(s) 121, 134
Hpy188III TCNNGA 4 cut(s) 146, 152, 217, 226
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 109, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 15, 171
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 106, 319
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 4 cut(s) 72, 148, 312, 342
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 1 cut(s) 110
Lsp1109I GCAGC 3 cut(s) 154, 206, 301
LweI GCATC 2 cut(s) 96, 238
MaeI CTAG 3 cut(s) 98, 330, 346
MalI GATC 4 cut(s) 74, 150, 314, 344
MboI GATC 4 cut(s) 72, 148, 312, 342
MboII GAAGA 2 cut(s) 167, 337
MluCI AATT 2 cut(s) 230, 236
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 78, 169, 220, 250, 286
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 4 cut(s) 72, 148, 312, 342
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 106, 319
NmeAIII GCCGAG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 169, 196, 291
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 291
PvuI CGATCG 1 cut(s) 75
SatI GCNGC 3 cut(s) 168, 195, 290
Sau3AI GATC 4 cut(s) 72, 148, 312, 342
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 143
SetI ASST 3 cut(s) 180, 246, 294
SfaNI GCATC 2 cut(s) 96, 238
SfcI CTRYAG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 230, 236
SsiI CCGC 1 cut(s) 273
SspMI CTAG 3 cut(s) 98, 330, 346
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 3 cut(s) 75, 216, 278
TaqII GACCGA 1 cut(s) 202
TasI AATT 2 cut(s) 230, 236
TfiI GAWTC 1 cut(s) 121
TseI GCWGC 3 cut(s) 167, 194, 289
XspI CTAG 3 cut(s) 98, 330, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.