exonuclease activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 713, 2874, 2973 |
| AarI | CACCTGC | 3 cut(s) | 325, 1194, 2945 |
| Acc36I | ACCTGC | 5 cut(s) | 325, 584, 1194, 2945, 3197 |
| AccB1I | GGYRCC | 1 cut(s) | 1909 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1536 |
| AccI | GTMKAC | 1 cut(s) | 1183 |
| AccII | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| AciI | CCGC | 8 cut(s) | 403, 1594, 1814, 2987, 3046, 3160, 3179, 3666 |
| AclWI | GGATC | 5 cut(s) | 129, 413, 655, 1419, 2449 |
| AcoI | YGGCCR | 3 cut(s) | 1001, 1005, 1029 |
| AcuI | CTGAAG | 2 cut(s) | 945, 2639 |
| AcvI | CACGTG | 1 cut(s) | 1131 |
| AcyI | GRCGYC | 1 cut(s) | 1910 |
| AdeI | CACNNNGTG | 1 cut(s) | 505 |
| AfaI | GTAC | 5 cut(s) | 2007, 2172, 2616, 3576, 3687 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1408, 1453, 1458, 1492, 1536, 2954 |
| AjiI | CACGTC | 4 cut(s) | 1470, 1920, 3138, 3350 |
| AjnI | CCWGG | 2 cut(s) | 1485, 3327 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 270, 302 |
| Alw21I | GWGCWC | 1 cut(s) | 2358 |
| Alw26I | GTCTC | 5 cut(s) | 834, 2044, 2402, 2683, 3299 |
| AlwI | GGATC | 5 cut(s) | 129, 413, 655, 1419, 2449 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2533 |
| Ama87I | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| AoxI | GGCC | 8 cut(s) | 1001, 1005, 1029, 1483, 1505, 2105, 2855, 3298 |
| ApeKI | GCWGC | 8 cut(s) | 672, 1134, 1541, 1634, 1675, 2087, 2156, 2656 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 327, 359 |
| AseI | ATTAAT | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2850, 3275 |
| AspA2I | CCTAGG | 1 cut(s) | 3236 |
| AspLEI | GCGC | 3 cut(s) | 1912, 3103, 3179 |
| AspS9I | GGNCC | 9 cut(s) | 429, 651, 1025, 1483, 1505, 1527, 1582, 2106, 3452 |
| AsuHPI | GGTGA | 5 cut(s) | 1063, 1441, 1682, 2759, 3125 |
| AsuII | TTCGAA | 1 cut(s) | 2601 |
| AsuNHI | GCTAGC | 1 cut(s) | 1475 |
| AvaI | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| AvaII | GGWCC | 6 cut(s) | 429, 651, 1025, 1527, 1582, 3452 |
| AvrII | CCTAGG | 1 cut(s) | 3236 |
| BanI | GGYRCC | 1 cut(s) | 1909 |
| BanII | GRGCYC | 3 cut(s) | 512, 2358, 2679 |
| BbrPI | CACGTG | 1 cut(s) | 1131 |
| BbsI | GAAGAC | 4 cut(s) | 1428, 2303, 3206, 3278 |
| Bbv12I | GWGCWC | 1 cut(s) | 2358 |
| BbvCI | CCTCAGC | 1 cut(s) | 2323 |
| BbvI | GCAGC | 8 cut(s) | 684, 1121, 1528, 1621, 1662, 2074, 2143, 2643 |
| BccI | CCATC | 9 cut(s) | 266, 633, 1016, 1033, 1101, 1697, 2218, 3390, 3695 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2750, 2784 |
| BciT130I | CCWGG | 2 cut(s) | 1487, 3329 |
| BcoDI | GTCTC | 5 cut(s) | 834, 2044, 2402, 2683, 3299 |
| BfmI | CTRYAG | 3 cut(s) | 154, 2399, 3087 |
| BfoI | RGCGCY | 1 cut(s) | 1913 |
| BfuAI | ACCTGC | 5 cut(s) | 325, 584, 1194, 2945, 3197 |
| BglII | AGATCT | 4 cut(s) | 1213, 1805, 1895, 2515 |
| BlnI | CCTAGG | 1 cut(s) | 3236 |
| Bme1390I | CCNGG | 2 cut(s) | 1487, 3329 |
| Bme18I | GGWCC | 6 cut(s) | 429, 651, 1025, 1527, 1582, 3452 |
| BmeT110I | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| BmgBI | CACGTC | 4 cut(s) | 1470, 1920, 3138, 3350 |
| BmgT120I | GGNCC | 9 cut(s) | 429, 651, 1025, 1483, 1505, 1527, 1582, 2106, 3452 |
| BmiI | GGNNCC | 8 cut(s) | 430, 431, 1156, 1484, 1528, 1776, 1911, 3454 |
| BmrFI | CCNGG | 2 cut(s) | 1487, 3329 |
| BmrI | ACTGGG | 1 cut(s) | 427 |
| BmsI | GCATC | 8 cut(s) | 927, 1153, 1634, 1735, 1818, 2752, 3008, 3454 |
| BmtI | GCTAGC | 1 cut(s) | 1479 |
| BmuI | ACTGGG | 1 cut(s) | 427 |
| BpiI | GAAGAC | 4 cut(s) | 1428, 2303, 3206, 3278 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 753, 785 |
| BpmI | CTGGAG | 1 cut(s) | 2690 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2102, 2323 |
| Bpu14I | TTCGAA | 1 cut(s) | 2601 |
| BpuEI | CTTGAG | 3 cut(s) | 1806, 2426, 2540 |
| Bsa29I | ATCGAT | 1 cut(s) | 3613 |
| BsaAI | YACGTR | 2 cut(s) | 1131, 3131 |
| BsaHI | GRCGYC | 1 cut(s) | 1910 |
| BsaI | GGTCTC | 3 cut(s) | 2402, 2683, 3299 |
| BsaJI | CCNNGG | 6 cut(s) | 1011, 1452, 2328, 3069, 3236, 3328 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 539, 569, 3355, 3385, 3405, 3435 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1408, 1453, 1458, 1492, 1536, 2954 |
| Bse118I | RCCGGY | 3 cut(s) | 1003, 1027, 2765 |
| Bse1I | ACTGG | 4 cut(s) | 127, 433, 471, 1032 |
| Bse3DI | GCAATG | 2 cut(s) | 3599, 3742 |
| BseBI | CCWGG | 2 cut(s) | 1487, 3329 |
| BseCI | ATCGAT | 1 cut(s) | 3613 |
| BseDI | CCNNGG | 6 cut(s) | 1011, 1452, 2328, 3069, 3236, 3328 |
| BseGI | GGATG | 9 cut(s) | 686, 1044, 1112, 1116, 2014, 2498, 2656, 3023, 3343 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1408, 1453, 1458, 1492, 1536, 2954 |
| BseMI | GCAATG | 2 cut(s) | 3599, 3742 |
| BseMII | CTCAG | 7 cut(s) | 749, 1890, 2151, 2337, 2519, 2525, 3596 |
| BseNI | ACTGG | 4 cut(s) | 127, 433, 471, 1032 |
| BseRI | GAGGAG | 1 cut(s) | 1366 |
| BseXI | GCAGC | 8 cut(s) | 684, 1121, 1528, 1621, 1662, 2074, 2143, 2643 |
| BseYI | CCCAGC | 2 cut(s) | 1645, 2672 |
| BsgI | GTGCAG | 4 cut(s) | 691, 1542, 2006, 2496 |
| Bsh1236I | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| BshFI | GGCC | 8 cut(s) | 1003, 1007, 1031, 1485, 1507, 2107, 2857, 3300 |
| BshNI | GGYRCC | 1 cut(s) | 1909 |
| BshVI | ATCGAT | 1 cut(s) | 3613 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2358 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| BsiSI | CCGG | 4 cut(s) | 1004, 1028, 2766, 3015 |
| BslFI | GGGAC | 4 cut(s) | 415, 1540, 2372, 3438 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1408, 1453, 1458, 1492, 1536, 2954 |
| BsmAI | GTCTC | 5 cut(s) | 834, 2044, 2402, 2683, 3299 |
| BsmFI | GGGAC | 4 cut(s) | 415, 1540, 2372, 3438 |
| BsmI | GAATGC | 1 cut(s) | 1647 |
| BsnI | GGCC | 8 cut(s) | 1003, 1007, 1031, 1485, 1507, 2107, 2857, 3300 |
| Bso31I | GGTCTC | 3 cut(s) | 2402, 2683, 3299 |
| BsoBI | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| Bsp119I | TTCGAA | 1 cut(s) | 2601 |
| Bsp1286I | GDGCHC | 3 cut(s) | 512, 2358, 2679 |
| BspACI | CCGC | 8 cut(s) | 403, 1594, 1814, 2987, 3046, 3160, 3179, 3666 |
| BspANI | GGCC | 8 cut(s) | 1003, 1007, 1031, 1485, 1507, 2107, 2857, 3300 |
| BspCNI | CTCAG | 7 cut(s) | 750, 1891, 2152, 2336, 2518, 2526, 3595 |
| BspDI | ATCGAT | 1 cut(s) | 3613 |
| BspFNI | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| BspHI | TCATGA | 1 cut(s) | 1059 |
| BspLI | GGNNCC | 8 cut(s) | 430, 431, 1156, 1484, 1528, 1776, 1911, 3454 |
| BspMAI | CTGCAG | 1 cut(s) | 158 |
| BspMI | ACCTGC | 5 cut(s) | 325, 584, 1194, 2945, 3197 |
| BspOI | GCTAGC | 1 cut(s) | 1479 |
| BspPI | GGATC | 5 cut(s) | 129, 413, 655, 1419, 2449 |
| BspQI | GCTCTTC | 1 cut(s) | 2060 |
| BspT104I | TTCGAA | 1 cut(s) | 2601 |
| BspT107I | GGYRCC | 1 cut(s) | 1909 |
| BspTNI | GGTCTC | 3 cut(s) | 2402, 2683, 3299 |
| BsrDI | GCAATG | 2 cut(s) | 3599, 3742 |
| BsrFI | RCCGGY | 3 cut(s) | 1003, 1027, 2765 |
| BsrI | ACTGG | 4 cut(s) | 127, 433, 471, 1032 |
| BssAI | RCCGGY | 3 cut(s) | 1003, 1027, 2765 |
| BssECI | CCNNGG | 6 cut(s) | 1011, 1452, 2328, 3069, 3236, 3328 |
| BssNI | GRCGYC | 1 cut(s) | 1910 |
| BssT1I | CCWWGG | 4 cut(s) | 1011, 2328, 3069, 3236 |
| Bst2UI | CCWGG | 2 cut(s) | 1487, 3329 |
| Bst4CI | ACNGT | 3 cut(s) | 235, 737, 2785 |
| Bst6I | CTCTTC | 4 cut(s) | 966, 1692, 1796, 2060 |
| BstACI | GRCGYC | 1 cut(s) | 1910 |
| BstBAI | YACGTR | 2 cut(s) | 1131, 3131 |
| BstBI | TTCGAA | 1 cut(s) | 2601 |
| BstEII | GGTNACC | 1 cut(s) | 1078 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1451 |
| BstF5I | GGATG | 9 cut(s) | 686, 1044, 1112, 1116, 2014, 2498, 2656, 3023, 3343 |
| BstFNI | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| BstH2I | RGCGCY | 1 cut(s) | 1913 |
| BstHHI | GCGC | 3 cut(s) | 1912, 3103, 3179 |
| BstMAI | GTCTC | 5 cut(s) | 834, 2044, 2402, 2683, 3299 |
| BstNI | CCWGG | 2 cut(s) | 1487, 3329 |
| BstNSI | RCATGY | 2 cut(s) | 1654, 3497 |
| BstPI | GGTNACC | 1 cut(s) | 1078 |
| BstSCI | CCNGG | 2 cut(s) | 1485, 3327 |
| BstSFI | CTRYAG | 3 cut(s) | 154, 2399, 3087 |
| BstSNI | TACGTA | 1 cut(s) | 3131 |
| BstUI | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| BstV1I | GCAGC | 8 cut(s) | 684, 1121, 1528, 1621, 1662, 2074, 2143, 2643 |
| BstV2I | GAAGAC | 4 cut(s) | 1428, 2303, 3206, 3278 |
| BstX2I | RGATCY | 5 cut(s) | 134, 1213, 1805, 1895, 2515 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1039, 2290 |
| BstYI | RGATCY | 5 cut(s) | 134, 1213, 1805, 1895, 2515 |
| Bsu15I | ATCGAT | 1 cut(s) | 3613 |
| BsuRI | GGCC | 8 cut(s) | 1003, 1007, 1031, 1485, 1507, 2107, 2857, 3300 |
| BsuTUI | ATCGAT | 1 cut(s) | 3613 |
| BtrI | CACGTC | 4 cut(s) | 1470, 1920, 3138, 3350 |
| BtsCI | GGATG | 9 cut(s) | 686, 1044, 1112, 1116, 2014, 2498, 2656, 3023, 3343 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| BveI | ACCTGC | 5 cut(s) | 325, 584, 1194, 2945, 3197 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2533 |
| CciI | TCATGA | 1 cut(s) | 1059 |
| CfoI | GCGC | 3 cut(s) | 1912, 3103, 3179 |
| Cfr10I | RCCGGY | 3 cut(s) | 1003, 1027, 2765 |
| Cfr13I | GGNCC | 9 cut(s) | 429, 651, 1025, 1483, 1505, 1527, 1582, 2106, 3452 |
| ClaI | ATCGAT | 1 cut(s) | 3613 |
| CseI | GACGC | 5 cut(s) | 177, 345, 2107, 2212, 2459 |
| Csp6I | GTAC | 5 cut(s) | 2006, 2171, 2615, 3575, 3686 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1159, 1194 |
| CviQI | GTAC | 5 cut(s) | 2006, 2171, 2615, 3575, 3686 |
| DinI | GGCGCC | 1 cut(s) | 1911 |
| DraI | TTTAAA | 7 cut(s) | 51, 93, 750, 1879, 2046, 2367, 2733 |
| DraIII | CACNNNGTG | 1 cut(s) | 505 |
| EaeI | YGGCCR | 3 cut(s) | 1001, 1005, 1029 |
| Eam1104I | CTCTTC | 4 cut(s) | 966, 1692, 1796, 2060 |
| EarI | CTCTTC | 4 cut(s) | 966, 1692, 1796, 2060 |
| EciI | GGCGGA | 1 cut(s) | 418 |
| Ecl136II | GAGCTC | 1 cut(s) | 2356 |
| Eco105I | TACGTA | 1 cut(s) | 3131 |
| Eco130I | CCWWGG | 4 cut(s) | 1011, 2328, 3069, 3236 |
| Eco24I | GRGCYC | 3 cut(s) | 512, 2358, 2679 |
| Eco31I | GGTCTC | 3 cut(s) | 2402, 2683, 3299 |
| Eco47I | GGWCC | 6 cut(s) | 429, 651, 1025, 1527, 1582, 3452 |
| Eco53kI | GAGCTC | 1 cut(s) | 2356 |
| Eco57I | CTGAAG | 2 cut(s) | 945, 2639 |
| Eco72I | CACGTG | 1 cut(s) | 1131 |
| Eco88I | CYCGRG | 3 cut(s) | 1714, 2678, 3457 |
| Eco91I | GGTNACC | 1 cut(s) | 1078 |
| EcoICRI | GAGCTC | 1 cut(s) | 2356 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1451 |
| EcoO109I | RGGNCCY | 1 cut(s) | 429 |
| EcoO65I | GGTNACC | 1 cut(s) | 1078 |
| EcoRI | GAATTC | 2 cut(s) | 643, 3526 |
| EcoRII | CCWGG | 2 cut(s) | 1485, 3327 |
| EcoT14I | CCWWGG | 4 cut(s) | 1011, 2328, 3069, 3236 |
| EcoT22I | ATGCAT | 3 cut(s) | 588, 825, 1656 |
| EcoT38I | GRGCYC | 3 cut(s) | 512, 2358, 2679 |
| EgeI | GGCGCC | 1 cut(s) | 1911 |
| EheI | GGCGCC | 1 cut(s) | 1911 |
| ErhI | CCWWGG | 4 cut(s) | 1011, 2328, 3069, 3236 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 325, 357, 2702, 2734 |
| FaqI | GGGAC | 4 cut(s) | 415, 1540, 2372, 3438 |
| FauI | CCCGC | 1 cut(s) | 1821 |
| FauNDI | CATATG | 1 cut(s) | 825 |
| FblI | GTMKAC | 1 cut(s) | 1183 |
| FokI | GGATG | 9 cut(s) | 673, 1051, 1119, 1123, 2001, 2505, 2663, 3030, 3330 |
| FriOI | GRGCYC | 3 cut(s) | 512, 2358, 2679 |
| FseI | GGCCGGCC | 1 cut(s) | 1007 |
| GlaI | GCGC | 3 cut(s) | 1911, 3102, 3178 |
| GsaI | CCCAGC | 2 cut(s) | 1649, 2676 |
| GsuI | CTGGAG | 1 cut(s) | 2690 |
| HaeII | RGCGCY | 1 cut(s) | 1913 |
| HaeIII | GGCC | 8 cut(s) | 1003, 1007, 1031, 1485, 1507, 2107, 2857, 3300 |
| HapII | CCGG | 4 cut(s) | 1004, 1028, 2766, 3015 |
| HgaI | GACGC | 5 cut(s) | 177, 345, 2107, 2212, 2459 |
| HhaI | GCGC | 3 cut(s) | 1912, 3103, 3179 |
| Hin1I | GRCGYC | 1 cut(s) | 1910 |
| Hin6I | GCGC | 3 cut(s) | 1910, 3101, 3177 |
| HinP1I | GCGC | 3 cut(s) | 1910, 3101, 3177 |
| HincII | GTYRAC | 2 cut(s) | 568, 3066 |
| HindII | GTYRAC | 2 cut(s) | 568, 3066 |
| HindIII | AAGCTT | 4 cut(s) | 64, 371, 2444, 3117 |
| HinfI | GANTC | 8 cut(s) | 418, 870, 1490, 2081, 2132, 2509, 2538, 3706 |
| HpaI | GTTAAC | 1 cut(s) | 3066 |
| HpaII | CCGG | 4 cut(s) | 1004, 1028, 2766, 3015 |
| HphI | GGTGA | 5 cut(s) | 1063, 1441, 1682, 2759, 3125 |
| Hpy166II | GTNNAC | 9 cut(s) | 568, 799, 1184, 1287, 2080, 2171, 2615, 3066, 3424 |
| Hpy8I | GTNNAC | 9 cut(s) | 568, 799, 1184, 1287, 2080, 2171, 2615, 3066, 3424 |
| Hpy99I | CGWCG | 2 cut(s) | 497, 523 |
| HpyAV | CCTTC | 9 cut(s) | 1608, 1717, 1784, 2124, 2146, 2635, 2703, 2704, 3327 |
| HpyCH4III | ACNGT | 3 cut(s) | 235, 737, 2785 |
| HpyCH4IV | ACGT | 8 cut(s) | 309, 570, 1130, 1469, 1919, 3130, 3137, 3349 |
| HpySE526I | ACGT | 8 cut(s) | 309, 570, 1130, 1469, 1919, 3130, 3137, 3349 |
| Hsp92I | GRCGYC | 1 cut(s) | 1910 |
| HspAI | GCGC | 3 cut(s) | 1910, 3101, 3177 |
| KasI | GGCGCC | 1 cut(s) | 1909 |
| KflI | GGGWCCC | 1 cut(s) | 429 |
| KroI | GCCGGC | 1 cut(s) | 1003 |
| KroNI | GCCGGC | 1 cut(s) | 1005 |
| KspAI | GTTAAC | 1 cut(s) | 3066 |
| LguI | GCTCTTC | 1 cut(s) | 2060 |
| LmnI | GCTCC | 4 cut(s) | 1160, 1716, 2024, 3719 |
| Lsp1109I | GCAGC | 8 cut(s) | 684, 1121, 1528, 1621, 1662, 2074, 2143, 2643 |
| LweI | GCATC | 8 cut(s) | 927, 1153, 1634, 1735, 1818, 2752, 3008, 3454 |
| MaeII | ACGT | 8 cut(s) | 309, 570, 1130, 1469, 1919, 3130, 3137, 3349 |
| MaeIII | GTNAC | 9 cut(s) | 214, 229, 571, 1078, 1552, 2095, 2495, 3049, 3564 |
| MflI | RGATCY | 5 cut(s) | 134, 1213, 1805, 1895, 2515 |
| MhlI | GDGCHC | 3 cut(s) | 512, 2358, 2679 |
| Mly113I | GGCGCC | 1 cut(s) | 1910 |
| MlyI | GAGTC | 2 cut(s) | 1499, 2075 |
| MmeI | TCCRAC | 3 cut(s) | 1016, 2325, 3391 |
| Mph1103I | ATGCAT | 3 cut(s) | 588, 825, 1656 |
| MroNI | GCCGGC | 1 cut(s) | 1003 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2850, 3275 |
| MslI | CAYNNNNRTG | 1 cut(s) | 614 |
| MspA1I | CMGCKG | 1 cut(s) | 1594 |
| MspI | CCGG | 4 cut(s) | 1004, 1028, 2766, 3015 |
| MspR9I | CCNGG | 2 cut(s) | 1487, 3329 |
| Mva1269I | GAATGC | 1 cut(s) | 1647 |
| MvaI | CCWGG | 2 cut(s) | 1487, 3329 |
| MvnI | CGCG | 5 cut(s) | 2453, 2989, 3048, 3101, 3179 |
| NaeI | GCCGGC | 1 cut(s) | 1005 |
| NarI | GGCGCC | 1 cut(s) | 1910 |
| NdeI | CATATG | 1 cut(s) | 825 |
| NgoMIV | GCCGGC | 1 cut(s) | 1003 |
| NheI | GCTAGC | 1 cut(s) | 1475 |
| NlaIV | GGNNCC | 8 cut(s) | 430, 431, 1156, 1484, 1528, 1776, 1911, 3454 |
| NmeAIII | GCCGAG | 1 cut(s) | 1477 |
| NmuCI | GTSAC | 2 cut(s) | 2095, 3564 |
| NsiI | ATGCAT | 3 cut(s) | 588, 825, 1656 |
| NspI | RCATGY | 2 cut(s) | 1654, 3497 |
| NspV | TTCGAA | 1 cut(s) | 2601 |
| PacI | TTAATTAA | 1 cut(s) | 369 |
| PaeI | GCATGC | 2 cut(s) | 1654, 3497 |
| PaeR7I | CTCGAG | 2 cut(s) | 2678, 3457 |
| PagI | TCATGA | 1 cut(s) | 1059 |
| PaqCI | CACCTGC | 3 cut(s) | 325, 1194, 2945 |
| PciSI | GCTCTTC | 1 cut(s) | 2060 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 518, 576 |
| PctI | GAATGC | 1 cut(s) | 1647 |
| PdiI | GCCGGC | 1 cut(s) | 1005 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2850, 3275 |
| PfeI | GAWTC | 6 cut(s) | 418, 870, 2132, 2509, 2538, 3706 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1536 |
| PleI | GAGTC | 2 cut(s) | 1498, 2075 |
| PluTI | GGCGCC | 1 cut(s) | 1913 |
| PmaCI | CACGTG | 1 cut(s) | 1131 |
| PmlI | CACGTG | 1 cut(s) | 1131 |
| PpsI | GAGTC | 2 cut(s) | 1498, 2075 |
| Ppu21I | YACGTR | 2 cut(s) | 1131, 3131 |
| PpuMI | RGGWCCY | 1 cut(s) | 429 |
| PshBI | ATTAAT | 1 cut(s) | 365 |
| PsiI | TTATAA | 3 cut(s) | 713, 2874, 2973 |
| Psp124BI | GAGCTC | 1 cut(s) | 2358 |
| Psp5II | RGGWCCY | 1 cut(s) | 429 |
| Psp6I | CCWGG | 2 cut(s) | 1485, 3327 |
| PspCI | CACGTG | 1 cut(s) | 1131 |
| PspEI | GGTNACC | 1 cut(s) | 1078 |
| PspFI | CCCAGC | 2 cut(s) | 1645, 2672 |
| PspGI | CCWGG | 2 cut(s) | 1485, 3327 |
| PspN4I | GGNNCC | 8 cut(s) | 430, 431, 1156, 1484, 1528, 1776, 1911, 3454 |
| PspPI | GGNCC | 9 cut(s) | 429, 651, 1025, 1483, 1505, 1527, 1582, 2106, 3452 |
| PspPPI | RGGWCCY | 1 cut(s) | 429 |
| PspXI | VCTCGAGB | 1 cut(s) | 2678 |
| PstI | CTGCAG | 1 cut(s) | 158 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2533 |
| PsuI | RGATCY | 5 cut(s) | 134, 1213, 1805, 1895, 2515 |
| RigI | GGCCGGCC | 1 cut(s) | 1007 |
| RsaI | GTAC | 5 cut(s) | 2007, 2172, 2616, 3576, 3687 |
| RsaNI | GTAC | 5 cut(s) | 2006, 2171, 2615, 3575, 3686 |
| RseI | CAYNNNNRTG | 1 cut(s) | 614 |
| SacI | GAGCTC | 1 cut(s) | 2358 |
| SapI | GCTCTTC | 1 cut(s) | 2060 |
| Sau96I | GGNCC | 9 cut(s) | 429, 651, 1025, 1483, 1505, 1527, 1582, 2106, 3452 |
| SchI | GAGTC | 2 cut(s) | 1499, 2075 |
| ScrFI | CCNGG | 2 cut(s) | 1487, 3329 |
| SduI | GDGCHC | 3 cut(s) | 512, 2358, 2679 |
| SfaNI | GCATC | 8 cut(s) | 927, 1153, 1634, 1735, 1818, 2752, 3008, 3454 |
| SfcI | CTRYAG | 3 cut(s) | 154, 2399, 3087 |
| SfoI | GGCGCC | 1 cut(s) | 1911 |
| Sfr274I | CTCGAG | 2 cut(s) | 2678, 3457 |
| SfuI | TTCGAA | 1 cut(s) | 2601 |
| SinI | GGWCC | 6 cut(s) | 429, 651, 1025, 1527, 1582, 3452 |
| SlaI | CTCGAG | 2 cut(s) | 2678, 3457 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 614 |
| SmlI | CTYRAG | 5 cut(s) | 1821, 2405, 2519, 2678, 3457 |
| SmoI | CTYRAG | 5 cut(s) | 1821, 2405, 2519, 2678, 3457 |
| SnaBI | TACGTA | 1 cut(s) | 3131 |
| SphI | GCATGC | 2 cut(s) | 1654, 3497 |
| SsiI | CCGC | 8 cut(s) | 403, 1594, 1814, 2987, 3046, 3160, 3179, 3666 |
| SspDI | GGCGCC | 1 cut(s) | 1909 |
| SspI | AATATT | 2 cut(s) | 274, 2380 |
| SstI | GAGCTC | 1 cut(s) | 2358 |
| StyD4I | CCNGG | 2 cut(s) | 1485, 3327 |
| StyI | CCWWGG | 4 cut(s) | 1011, 2328, 3069, 3236 |
| TaaI | ACNGT | 3 cut(s) | 235, 737, 2785 |
| TaiI | ACGT | 8 cut(s) | 312, 573, 1133, 1472, 1922, 3133, 3140, 3352 |
| TatI | WGTACW | 2 cut(s) | 2170, 2614 |
| TauI | GCSGC | 3 cut(s) | 1597, 3182, 3668 |
| TfiI | GAWTC | 6 cut(s) | 418, 870, 2132, 2509, 2538, 3706 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 2 cut(s) | 2095, 3564 |
| TseI | GCWGC | 8 cut(s) | 672, 1134, 1541, 1634, 1675, 2087, 2156, 2656 |
| Tsp45I | GTSAC | 2 cut(s) | 2095, 3564 |
| TspGWI | ACGGA | 3 cut(s) | 1102, 1993, 3703 |
| TspRI | CASTG | 1 cut(s) | 127 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1536 |
| VpaK11BI | GGWCC | 6 cut(s) | 429, 651, 1025, 1527, 1582, 3452 |
| VspI | ATTAAT | 1 cut(s) | 365 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1451 |
| XbaI | TCTAGA | 1 cut(s) | 1961 |
| XceI | RCATGY | 2 cut(s) | 1654, 3497 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 890, 1700, 1868, 1924 |
| XhoI | CTCGAG | 2 cut(s) | 2678, 3457 |
| XmaJI | CCTAGG | 1 cut(s) | 3236 |
| XmiI | GTMKAC | 1 cut(s) | 1183 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2850, 3275 |
| Zsp2I | ATGCAT | 3 cut(s) | 588, 825, 1656 |