pycom13g17590

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0005203
Physical Location & Seq
Reverse (-)
13408123 .. 13408537
415 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g17590.1

Sequence Viewer

Length: 315 bp
ATGCATAAGACTTTGATCCTGGCAACTGAGTCTATGCGCATTGATCAGGATGTTGTCAAGTGTGTTAAAGAGGCCGAAGTGGCGTTGGTGGCTCAGTTTCGCTCGGCTGCTGAAAAAATCGAGAAGCTCGAATCTGAACTTGCCGTTTTGAAGGGATCTGATGTCTTCGCCCCCACTTATATGCAGTTGGAGATCGTTCATCAAGAGGTTGTTAACTTGAAGACTAGGTTTAGTGCGACTCAAGTGATGTTGGAAGCTGCAGAGAAGGAAGCCATGTCTCATCTCAAGGAGATTCCCAGTAAGCTTGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

5.38

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
AclWI GGATC 2 cut(s) 10, 163
AgsI TTSAA 2 cut(s) 151, 220
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 127, 257, 304
AluI AGCT 3 cut(s) 127, 257, 304
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 2 cut(s) 10, 163
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 107, 257
AspLEI GCGC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 157, 227
BbvI GCAGC 2 cut(s) 94, 244
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 225, 313
BfmI CTRYAG 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 108, 258
BlsI GCNGC 2 cut(s) 109, 259
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 157, 227
BpuEI CTTGAG 2 cut(s) 225, 269
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 18, 107
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 94, 244
BshFI GGCC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 4 cut(s) 15, 43, 155, 192
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 19, 106
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 10, 163
BsrI ACTGG 1 cut(s) 297
BssMI GATC 4 cut(s) 15, 43, 155, 192
Bst2UI CCWGG 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 27, 93
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 4 cut(s) 18, 46, 158, 195
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 15, 43, 155, 192
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 94, 244
BstV2I GAAGAC 2 cut(s) 157, 227
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 55
CfoI GCGC 1 cut(s) 39
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 74, 92, 107, 127, 257, 272, 304
CviKI_1 RGCY 7 cut(s) 74, 92, 107, 127, 257, 272, 304
DdeI CTNAG 2 cut(s) 27, 93
DpnI GATC 4 cut(s) 17, 45, 157, 194
DpnII GATC 4 cut(s) 15, 43, 155, 192
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 6, 35, 180, 182, 275
FatI CATG 1 cut(s) 273
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 108, 258
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 108, 258
FspAI RTGCGCAY 1 cut(s) 38
FspBI CTAG 2 cut(s) 225, 313
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 108, 258
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 5 cut(s) 29, 131, 238, 292, 308
HpaI GTTAAC 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 136, 160
Hpy188III TCNNGA 3 cut(s) 47, 121, 203
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 145, 259
HpyCH4V TGCA 3 cut(s) 4, 184, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpyF3I CTNAG 2 cut(s) 27, 93
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 15, 43, 155, 192
LpnPI CCDG 4 cut(s) 5, 32, 32, 310
Lsp1109I GCAGC 2 cut(s) 94, 244
MaeI CTAG 2 cut(s) 225, 313
MalI GATC 4 cut(s) 17, 45, 157, 194
MboI GATC 4 cut(s) 15, 43, 155, 192
MboII GAAGA 2 cut(s) 157, 232
MflI RGATCY 1 cut(s) 155
MlyI GAGTC 2 cut(s) 38, 232
MmeI TCCRAC 2 cut(s) 168, 231
MnlI CCTC 2 cut(s) 64, 199
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 66, 213
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NdeII GATC 4 cut(s) 15, 43, 155, 192
NlaIII CATG 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 131, 292
PkrI GCNGC 2 cut(s) 109, 259
PleI GAGTC 2 cut(s) 37, 232
PpsI GAGTC 2 cut(s) 37, 232
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 66, 213
SatI GCNGC 2 cut(s) 108, 258
Sau3AI GATC 4 cut(s) 15, 43, 155, 192
SchI GAGTC 2 cut(s) 38, 232
ScrFI CCNGG 1 cut(s) 20
SetI ASST 5 cut(s) 129, 210, 230, 259, 306
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 3 cut(s) 240, 284, 305
SmoI CTYRAG 3 cut(s) 240, 284, 305
SspMI CTAG 2 cut(s) 225, 313
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 2 cut(s) 120, 129
TfiI GAWTC 2 cut(s) 131, 292
Tru1I TTAA 2 cut(s) 66, 213
Tru9I TTAA 2 cut(s) 66, 213
TseI GCWGC 2 cut(s) 107, 257
TspDTI ATGAA 1 cut(s) 188
XspI CTAG 2 cut(s) 225, 313
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.