Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002484

Physical Location & Seq

Genomic Coordinates Forward (+)

10085994 .. 10087442

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGACCATGAGAGCGAGCAAAGCGAAGACGAAAGGCCTCAACGACAAGCTGTCTCTCGAAGATTACCTTCTCCTCATTCAATCTCACTCCGACCTCCATCTCACCAAAGTTCATCTCAATCAGATCATCAGCATGCACGGTTACAAGAAACTCCACAAAGTTCCCAAGAAACTTCTAAACGACGCCGTGAGCACACTGACTCTGGTCGAGCCGAGCCGCTCTACGCTCAGAAAGTACATCTCTCCCTTGGTCATCACTACGCTCGAGGACGTGGTCGCCGACCTCGACCACCTCAACTGGAAAGAGTGCTGCATCACCTCCATCGAAACTCTGAGCTCATGGCAAAACGCCCACTCTTCCCTTCCTCTGACGAGCCCTCAACAGGACGTCGTCCGCTACAGCAAGCATCAACCATCGGCGCTCCTGGCCCTGGATTCGACACCCTACGGCTCCGTTTCCGCTCCTGACGGCGCTTCGCTGCCGTCTAGAGCTTCTGAGACCGCTCGTCATCCAGCGGAGAAATTGGCGCCGAAGAGGAAGAGGAAGACGTCACCGAGAGGCGGCGGTGGCGCTCATGCTGCTTTGCATTCTGTTTCGTACGGATCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.32

Weight (kDa)

9.42

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06320
fragaria_vesca	FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27231
malus_domestica	MD08G1181200.v1.1 MD09G1238400.v1.1
prunus_persica	Prupe.3G117900_v2.0.a1 Prupe.3G121400_v2.0.a1
pyrus_communis	pycom17g23480
rosa_chinensis	RchiOBHm_Chr2g0129291 RchiOBHm_Chr2g0129301 RchiOBHm_Chr2g0129361
rosa_laevigata	RLG00000019071 RLG00000019072 RLG00000019073
rosa_multiflora	Rmu_co8026068.1_g000001 Rmu_sc0001171.1_g000003 Rmu_sc0005230.1_g000012 Rmu_sc0005230.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114680 Rroxscaffold_2G00114700
rosa_rugosa	Rorug02G0286000 Rorug02G0286100
rosa_samantha	Rh2AG337900 Rh2AG338000 Rh2AG338100 Rh2BG345700 Rh2BG345800 Rh2BG346200 Rh2CG325600 Rh2CG325700 Rh2DG363200 Rh2DG363300 Rh2DG364000
rosa_wichuraiana	Rw0G002920 Rw2G027410 Rw2G027420 Rw2G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	393, 554
AccB1I	GGYRCC	1 cut(s)	529
AccBSI	CCGCTC	3 cut(s)	222, 464, 506
AciI	CCGC	7 cut(s)	220, 397, 462, 504, 518, 564, 567
AclWI	GGATC	1 cut(s)	613
AcyI	GRCGYC	4 cut(s)	186, 390, 530, 551
AfaI	GTAC	2 cut(s)	239, 602
AfiI	CCNNNNNNNGG	3 cut(s)	385, 433, 563
AgsI	TTSAA	1 cut(s)	83
AhdI	GACNNNNNGTC	2 cut(s)	52, 507
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	426, 432
AluBI	AGCT	3 cut(s)	52, 339, 494
AluI	AGCT	3 cut(s)	52, 339, 494
Alw21I	GWGCWC	2 cut(s)	197, 341
Alw26I	GTCTC	2 cut(s)	60, 494
AlwI	GGATC	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	37, 429
ApeKI	GCWGC	3 cut(s)	312, 481, 581
AspLEI	GCGC	4 cut(s)	424, 476, 532, 575
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	97, 310, 546
AvaI	CYCGRG	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	341, 380
BbsI	GAAGAC	2 cut(s)	35, 554
Bbv12I	GWGCWC	2 cut(s)	197, 341
BbvI	GCAGC	3 cut(s)	299, 468, 568
BccI	CCATC	3 cut(s)	108, 332, 424
BceAI	ACGGC	4 cut(s)	173, 466, 469, 487
BciT130I	CCWGG	2 cut(s)	428, 434
BcoDI	GTCTC	2 cut(s)	60, 494
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	400
BfoI	RGCGCY	4 cut(s)	425, 477, 533, 576
BisI	GCNGC	5 cut(s)	220, 313, 482, 565, 582
BlsI	GCNGC	5 cut(s)	221, 314, 483, 566, 583
Bme1390I	CCNGG	2 cut(s)	428, 434
BmeRI	GACNNNNNGTC	2 cut(s)	52, 507
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	454, 531
BmrFI	CCNGG	2 cut(s)	428, 434
BmsI	GCATC	2 cut(s)	324, 418
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	35, 554
BsaHI	GRCGYC	4 cut(s)	186, 390, 530, 551
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	249, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 433, 563
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	428, 434
BseDI	CCNNGG	2 cut(s)	249, 432
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	385, 433, 563
BseMII	CTCAG	3 cut(s)	244, 326, 489
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	299, 468, 568
BshFI	GGCC	2 cut(s)	39, 431
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	2 cut(s)	197, 341
BsiHKCI	CYCGRG	1 cut(s)	266
BsiWI	CGTACG	1 cut(s)	600
BslI	CCNNNNNNNGG	3 cut(s)	385, 433, 563
BsmAI	GTCTC	2 cut(s)	60, 494
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	39, 431
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	197, 341, 380
Bsp143I	GATC	2 cut(s)	126, 605
BspACI	CCGC	7 cut(s)	220, 397, 462, 504, 518, 564, 567
BspANI	GGCC	2 cut(s)	39, 431
BspCNI	CTCAG	3 cut(s)	243, 327, 490
BspLI	GGNNCC	2 cut(s)	454, 531
BspPI	GGATC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	494
BsrBI	CCGCTC	3 cut(s)	222, 464, 506
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	249, 432
BssMI	GATC	2 cut(s)	126, 605
BssNI	GRCGYC	4 cut(s)	186, 390, 530, 551
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	428, 434
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	3 cut(s)	364, 530, 536
BstACI	GRCGYC	4 cut(s)	186, 390, 530, 551
BstC8I	GCNNGC	3 cut(s)	19, 137, 407
BstDEI	CTNAG	3 cut(s)	230, 335, 498
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	4 cut(s)	425, 477, 533, 576
BstHHI	GCGC	4 cut(s)	424, 476, 532, 575
BstKTI	GATC	2 cut(s)	129, 608
BstMAI	GTCTC	2 cut(s)	60, 494
BstMBI	GATC	2 cut(s)	126, 605
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 428, 570, 581
BstNI	CCWGG	2 cut(s)	428, 434
BstNSI	RCATGY	1 cut(s)	139
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	426, 432
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	299, 468, 568
BstV2I	GAAGAC	2 cut(s)	35, 554
BsuRI	GGCC	2 cut(s)	39, 431
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	19, 137, 407
CfoI	GCGC	4 cut(s)	424, 476, 532, 575
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	238, 601
CviAII	CATG	4 cut(s)	10, 136, 342, 578
CviJI	RGCY	9 cut(s)	39, 52, 214, 219, 339, 378, 431, 453, 494
CviKI_1	RGCY	9 cut(s)	39, 52, 214, 219, 339, 378, 431, 453, 494
CviQI	GTAC	2 cut(s)	238, 601
DdeI	CTNAG	3 cut(s)	230, 335, 498
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	2 cut(s)	128, 607
DpnII	GATC	2 cut(s)	126, 605
DriI	GACNNNNNGTC	2 cut(s)	52, 507
Eam1104I	CTCTTC	3 cut(s)	364, 530, 536
Eam1105I	GACNNNNNGTC	2 cut(s)	52, 507
EarI	CTCTTC	3 cut(s)	364, 530, 536
Ecl136II	GAGCTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	341, 380
Eco31I	GGTCTC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	426, 432
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	341, 380
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	13, 139, 345, 581
FaiI	YATR	4 cut(s)	11, 137, 343, 579
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	4 cut(s)	9, 135, 341, 577
Fnu4HI	GCNGC	5 cut(s)	220, 313, 482, 565, 582
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	2 cut(s)	341, 380
Fsp4HI	GCNGC	5 cut(s)	220, 313, 482, 565, 582
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	4 cut(s)	423, 475, 531, 574
GluI	GCNGC	5 cut(s)	220, 313, 482, 565, 582
HaeII	RGCGCY	4 cut(s)	425, 477, 533, 576
HaeIII	GGCC	2 cut(s)	39, 431
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	4 cut(s)	424, 476, 532, 575
Hin1I	GRCGYC	4 cut(s)	186, 390, 530, 551
Hin1II	CATG	4 cut(s)	13, 139, 345, 581
Hin6I	GCGC	4 cut(s)	422, 474, 530, 573
HinP1I	GCGC	4 cut(s)	422, 474, 530, 573
HinfI	GANTC	2 cut(s)	202, 437
HphI	GGTGA	3 cut(s)	97, 310, 546
Hpy188I	TCNGA	6 cut(s)	94, 126, 233, 336, 372, 499
Hpy188III	TCNNGA	3 cut(s)	59, 467, 489
Hpy99I	CGWCG	2 cut(s)	188, 395
HpyAV	CCTTC	2 cut(s)	80, 374
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	3 cut(s)	273, 390, 551
HpyCH4V	TGCA	3 cut(s)	139, 315, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 428, 570, 581
HpyF3I	CTNAG	3 cut(s)	230, 335, 498
HpySE526I	ACGT	3 cut(s)	273, 390, 551
Hsp92I	GRCGYC	4 cut(s)	186, 390, 530, 551
Hsp92II	CATG	4 cut(s)	13, 139, 345, 581
HspAI	GCGC	4 cut(s)	422, 474, 530, 573
KasI	GGCGCC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	126, 605
LmnI	GCTCC	3 cut(s)	429, 458, 469
LpnPI	CCDG	9 cut(s)	191, 286, 371, 413, 419, 440, 446, 480, 528
Lsp1109I	GCAGC	3 cut(s)	299, 468, 568
LweI	GCATC	2 cut(s)	324, 418
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	273, 390, 551
MaeIII	GTNAC	2 cut(s)	143, 552
MalI	GATC	2 cut(s)	128, 607
MbiI	CCGCTC	3 cut(s)	222, 464, 506
MboI	GATC	2 cut(s)	126, 605
MboII	GAAGA	6 cut(s)	40, 74, 351, 547, 553, 559
MhlI	GDGCHC	3 cut(s)	197, 341, 380
MluCI	AATT	1 cut(s)	524
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	428, 434
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	428, 434
MwoI	GCNNNNNNNGC	4 cut(s)	23, 428, 570, 581
NarI	GGCGCC	1 cut(s)	530
NdeII	GATC	2 cut(s)	126, 605
NlaIII	CATG	4 cut(s)	13, 139, 345, 581
NlaIV	GGNNCC	2 cut(s)	454, 531
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	552
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 285, 605
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	437
Pfl23II	CGTACG	1 cut(s)	600
PflFI	GACNNNGTC	2 cut(s)	275, 392
PkrI	GCNGC	5 cut(s)	221, 314, 483, 566, 583
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	196
PshAI	GACNNNNGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	426, 432
PspGI	CCWGG	2 cut(s)	426, 432
PspLI	CGTACG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	454, 531
PspPI	GGNCC	1 cut(s)	430
PspXI	VCTCGAGB	1 cut(s)	266
PsyI	GACNNNGTC	2 cut(s)	275, 392
RsaI	GTAC	2 cut(s)	239, 602
RsaNI	GTAC	2 cut(s)	238, 601
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	341
SatI	GCNGC	5 cut(s)	220, 313, 482, 565, 582
Sau3AI	GATC	2 cut(s)	126, 605
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	428, 434
SduI	GDGCHC	3 cut(s)	197, 341, 380
SfaNI	GCATC	2 cut(s)	324, 418
SfcI	CTRYAG	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	7 cut(s)	220, 397, 462, 504, 518, 564, 567
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	341
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	426, 432
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	3 cut(s)	276, 393, 554
TaqI	TCGA	6 cut(s)	60, 210, 267, 288, 327, 440
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	222, 567
TfiI	GAWTC	1 cut(s)	437
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	3 cut(s)	312, 481, 581
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	204
Tth111I	GACNNNGTC	2 cut(s)	275, 392
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	1 cut(s)	489
ZraI	GACGTC	2 cut(s)	391, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.