Rroxscaffold_2G00114700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002484
Physical Location & Seq
Reverse (-)
40842657 .. 40843860
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114700.1

Sequence Viewer

Length: 606 bp
ATGATGGAGATGGTGAATGTAAGCCAACGCAAGACGAAAAGGCAGAGCGAGAAGATGTCTCTGGAAGACTACCTCCTTCTTATTCAGTCTCGCTCCAACCTCCACCTCACCGTCACTCACCTCAATCAGATCATCAGCATGCACGGATTCAAAAAACTTCACAGACTTCACAAGAAAGTTCTGAGCGACGCCGTGAGCACACTGGACCTGGTGGAACCAAGCCGCTCTACGCTTCGGGACTACATCTCGCCGCCGATCAGCACTTGTCTGAACGACGTCGTCGCGGACATGAACGACCTGAGCTGGCGGGAGTGCTGCGTCACCGCCATCAAAACGCTGAGCTCGTGTCAACTAAACGACGCCGTCGAGTGCTCGAAGAGCCACCAATCGCCTCCCACGGCTCTGGATTCCCACGGCGGCGGCGTTTCCGGTACTACATTTCAGGGAAGGGCTGAGCCATTGAGGAAACTGGTGCAGTGGAAGAAGAAACGGACTCAGGAGAGCGCTGATCCGGTGGTGAAGAGGCAGAGGATGAGATCGGAAAGCGACGGTGGTGGTGGCGCCGCCGCTCATGCTTTGGATTGTGTCTCGTTGGATTCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.28

Weight (kDa)

8.86

Isoelectric Point (pI)

64.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 16 - 71 1.2e-26 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 2 cut(s) 225, 569
AccII CGCG 1 cut(s) 284
AciI CCGC 9 cut(s) 223, 251, 284, 307, 324, 417, 420, 564, 567
AclWI GGATC 1 cut(s) 503
AcyI GRCGYC 4 cut(s) 189, 276, 360, 561
AfaI GTAC 1 cut(s) 433
AfeI AGCGCT 1 cut(s) 505
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 303, 342
AluI AGCT 2 cut(s) 303, 342
Alw21I GWGCWC 3 cut(s) 200, 344, 374
Alw26I GTCTC 3 cut(s) 63, 93, 592
AlwI GGATC 1 cut(s) 503
Aor51HI AGCGCT 1 cut(s) 505
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 506, 563
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 5 cut(s) 25, 100, 110, 313, 529
AvaII GGWCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 3 cut(s) 200, 344, 374
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 4, 335
BceAI ACGGC 4 cut(s) 176, 347, 414, 430
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 63, 93, 592
BfoI RGCGCY 2 cut(s) 507, 564
BisI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 564, 567
BlpI GCTNAGC 2 cut(s) 338, 453
BlsI GCNGC 7 cut(s) 224, 252, 317, 419, 422, 565, 568
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 216, 562
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 2 cut(s) 338, 453
BsaHI GRCGYC 4 cut(s) 189, 276, 360, 561
BsaJI CCNNGG 2 cut(s) 396, 412
BsaWI WCCGGW 2 cut(s) 428, 511
Bse1I ACTGG 2 cut(s) 207, 474
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 396, 412
BseGI GGATG 1 cut(s) 537
BseMII CTCAG 5 cut(s) 173, 290, 329, 444, 509
BseNI ACTGG 2 cut(s) 207, 474
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 560
BsiHKAI GWGCWC 3 cut(s) 200, 344, 374
BsiSI CCGG 2 cut(s) 429, 512
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 3 cut(s) 63, 93, 592
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 200, 344, 374
Bsp143I GATC 4 cut(s) 129, 255, 508, 536
Bsp1720I GCTNAGC 2 cut(s) 338, 453
BspACI CCGC 9 cut(s) 223, 251, 284, 307, 324, 417, 420, 564, 567
BspCNI CTCAG 5 cut(s) 174, 291, 330, 445, 508
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 216, 562
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 560
BsrBI CCGCTC 2 cut(s) 225, 569
BsrI ACTGG 2 cut(s) 207, 474
BssECI CCNNGG 2 cut(s) 396, 412
BssMI GATC 4 cut(s) 129, 255, 508, 536
BssNI GRCGYC 4 cut(s) 189, 276, 360, 561
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 112, 551
Bst6I CTCTTC 2 cut(s) 371, 515
BstACI GRCGYC 4 cut(s) 189, 276, 360, 561
BstC8I GCNNGC 2 cut(s) 140, 305
BstDEI CTNAG 5 cut(s) 182, 299, 338, 453, 495
BstDSI CCRYGG 2 cut(s) 396, 412
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 2 cut(s) 507, 564
BstHHI GCGC 2 cut(s) 506, 563
BstKTI GATC 4 cut(s) 132, 258, 511, 539
BstMAI GTCTC 3 cut(s) 63, 93, 592
BstMBI GATC 4 cut(s) 129, 255, 508, 536
BstMWI GCNNNNNNNGC 2 cut(s) 378, 572
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 396, 412
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 2 cut(s) 200, 482
Cac8I GCNNGC 2 cut(s) 140, 305
CfoI GCGC 2 cut(s) 506, 563
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 3 cut(s) 197, 307, 368
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 432
CviAII CATG 3 cut(s) 139, 289, 572
CviJI RGCY 8 cut(s) 24, 222, 303, 342, 381, 401, 452, 457
CviKI_1 RGCY 8 cut(s) 24, 222, 303, 342, 381, 401, 452, 457
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 5 cut(s) 182, 299, 338, 453, 495
DinI GGCGCC 1 cut(s) 562
DpnI GATC 4 cut(s) 131, 257, 510, 538
DpnII GATC 4 cut(s) 129, 255, 508, 536
Eam1104I CTCTTC 2 cut(s) 371, 515
EarI CTCTTC 2 cut(s) 371, 515
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
FaeI CATG 3 cut(s) 142, 292, 575
FaiI YATR 3 cut(s) 140, 290, 573
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 138, 288, 571
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 564, 567
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 564, 567
GlaI GCGC 2 cut(s) 505, 562
GluI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 564, 567
HaeII RGCGCY 2 cut(s) 507, 564
HapII CCGG 2 cut(s) 429, 512
HgaI GACGC 3 cut(s) 197, 307, 368
HhaI GCGC 2 cut(s) 506, 563
Hin1I GRCGYC 4 cut(s) 189, 276, 360, 561
Hin1II CATG 3 cut(s) 142, 292, 575
Hin6I GCGC 2 cut(s) 504, 561
HinP1I GCGC 2 cut(s) 504, 561
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 4 cut(s) 147, 407, 493, 596
HpaII CCGG 2 cut(s) 429, 512
HphI GGTGA 5 cut(s) 25, 100, 110, 313, 529
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 4 cut(s) 129, 183, 270, 541
Hpy188III TCNNGA 4 cut(s) 62, 236, 404, 497
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 7 cut(s) 191, 278, 281, 284, 362, 368, 551
HpyAV CCTTC 2 cut(s) 86, 441
HpyCH4III ACNGT 2 cut(s) 112, 551
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 142, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 572
HpyF3I CTNAG 5 cut(s) 182, 299, 338, 453, 495
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 4 cut(s) 189, 276, 360, 561
Hsp92II CATG 3 cut(s) 142, 292, 575
HspAI GCGC 2 cut(s) 504, 561
KasI GGCGCC 1 cut(s) 560
Kzo9I GATC 4 cut(s) 129, 255, 508, 536
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 207
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 112, 319
MalI GATC 4 cut(s) 131, 257, 510, 538
MbiI CCGCTC 2 cut(s) 225, 569
MboI GATC 4 cut(s) 129, 255, 508, 536
MboII GAAGA 6 cut(s) 64, 77, 388, 493, 496, 532
MhlI GDGCHC 3 cut(s) 200, 344, 374
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 2 cut(s) 120, 573
MnlI CCTC 8 cut(s) 83, 110, 116, 131, 402, 456, 516, 522
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 2 cut(s) 429, 512
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 378, 572
NarI GGCGCC 1 cut(s) 561
NdeII GATC 4 cut(s) 129, 255, 508, 536
NlaIII CATG 3 cut(s) 142, 292, 575
NlaIV GGNNCC 2 cut(s) 216, 562
NmuCI GTSAC 2 cut(s) 112, 319
NspI RCATGY 1 cut(s) 142
PaeI GCATGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 4 cut(s) 341, 363, 420, 596
PfeI GAWTC 3 cut(s) 147, 407, 596
PflFI GACNNNGTC 2 cut(s) 278, 362
PkrI GCNGC 7 cut(s) 224, 252, 317, 419, 422, 565, 568
PleI GAGTC 1 cut(s) 487
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 216, 562
PspPI GGNCC 1 cut(s) 205
PsyI GACNNNGTC 2 cut(s) 278, 362
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 564, 567
Sau3AI GATC 4 cut(s) 129, 255, 508, 536
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 3 cut(s) 200, 344, 374
SetI ASST 9 cut(s) 75, 102, 108, 123, 210, 279, 300, 305, 344
SexAI ACCWGGT 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 562
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 137
SphI GCATGC 1 cut(s) 142
SsiI CCGC 9 cut(s) 223, 251, 284, 307, 324, 417, 420, 564, 567
SspDI GGCGCC 1 cut(s) 560
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 112, 551
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 366, 374
TauI GCSGC 6 cut(s) 225, 253, 420, 423, 566, 569
TfiI GAWTC 3 cut(s) 147, 407, 596
TscAI CASTG 2 cut(s) 207, 482
TseFI GTSAC 2 cut(s) 112, 319
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 112, 319
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 159, 505
TspRI CASTG 2 cut(s) 207, 482
Tth111I GACNNNGTC 2 cut(s) 278, 362
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 1 cut(s) 142
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.