Rw0G002920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00094
OG0002484
Physical Location & Seq
Forward (+)
2076 .. 2770
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002920.1

Sequence Viewer

Length: 498 bp
ATGGCGAGCAAGGCTAAGAATAACGCGAATGCGAAGATGTCTCTGGATGATTACCTCCTTCTCCTCCAGTCTGGCTCCCACCTCCACCTCACCGTCAGCCATCTCAATCAGATCATCAGCATGCACGGCTACAAGAAGATCCACAAAGTTCACAAGAAGCTTCTGAGCGACGCCGTGAACTCACTGCAGCTGGTGAACCCGTTCCGCTCCACGCTTAGGGACTACATCTCGCCGCTGGTAACGACGAAGATGGATGACGTCTTCGCCGACCTCAGCGATCTCAACTGGCAAGACTGTTGCATCACCTCCATCCAAACCCTCAGTTCGTGGGAGGACCAGTCCCCTCCTCCCCGAAACGGCGCCGTCCAGTTCCAACACTACTCGCTGTCCACCGCAGCCCACAGCGTGATCGTTTCTGCTCCCGGACCGACCAAGAAGAGATCGGCGAGGAAGAGGAAGCGGACTGCTAAAGTGGCCGATCTGGTAAATTTCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.38

Weight (kDa)

9.73

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 10 - 66 3.4e-24 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 205, 233, 393, 460
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 3 cut(s) 171, 258, 360
AdeI CACNNNGTG 1 cut(s) 406
AfiI CCNNNNNNNGG 2 cut(s) 216, 356
AluBI AGCT 2 cut(s) 160, 190
AluI AGCT 2 cut(s) 160, 190
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 133
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 2 cut(s) 187, 395
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 334, 425
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 82, 205, 295
AvaII GGWCC 2 cut(s) 334, 425
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 199, 407
BccI CCATC 3 cut(s) 108, 244, 317
BceAI ACGGC 4 cut(s) 142, 158, 347, 373
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 3 cut(s) 188, 233, 396
BlsI GCNGC 3 cut(s) 189, 234, 397
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 334, 425
BmgT120I GGNCC 2 cut(s) 334, 425
BmiI GGNNCC 2 cut(s) 76, 361
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 2 cut(s) 215, 272
BpuMI CCSGG 1 cut(s) 423
BsaHI GRCGYC 3 cut(s) 171, 258, 360
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 356
Bse1I ACTGG 4 cut(s) 67, 290, 337, 367
BseGI GGATG 3 cut(s) 52, 259, 309
BseLI CCNNNNNNNGG 2 cut(s) 216, 356
BseMII CTCAG 3 cut(s) 155, 286, 334
BseNI ACTGG 4 cut(s) 67, 290, 337, 367
BseRI GAGGAG 2 cut(s) 53, 336
BseXI GCAGC 2 cut(s) 199, 407
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 233, 325
BslI CCNNNNNNNGG 2 cut(s) 216, 356
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 2 cut(s) 233, 325
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 476
Bsp143I GATC 6 cut(s) 111, 138, 277, 408, 440, 478
BspACI CCGC 4 cut(s) 205, 233, 393, 460
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 3 cut(s) 156, 285, 333
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 76, 361
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 207
BsrI ACTGG 4 cut(s) 67, 290, 337, 367
BssMI GATC 6 cut(s) 111, 138, 277, 408, 440, 478
BssNI GRCGYC 3 cut(s) 171, 258, 360
Bst4CI ACNGT 2 cut(s) 94, 296
Bst6I CTCTTC 2 cut(s) 431, 446
BstACI GRCGYC 3 cut(s) 171, 258, 360
BstC8I GCNNGC 2 cut(s) 7, 122
BstDEI CTNAG 5 cut(s) 15, 164, 215, 272, 320
BstF5I GGATG 3 cut(s) 52, 259, 309
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 6 cut(s) 114, 141, 280, 411, 443, 481
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 6 cut(s) 111, 138, 277, 408, 440, 478
BstMWI GCNNNNNNNGC 3 cut(s) 11, 126, 473
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 199, 407
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 3 cut(s) 52, 259, 309
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 7, 122
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 334, 425
CpoI CGGWCCG 1 cut(s) 425
CseI GACGC 1 cut(s) 179
CspI CGGWCCG 1 cut(s) 425
CviAII CATG 1 cut(s) 121
CviJI RGCY 8 cut(s) 14, 75, 99, 129, 160, 190, 398, 476
CviKI_1 RGCY 8 cut(s) 14, 75, 99, 129, 160, 190, 398, 476
DdeI CTNAG 5 cut(s) 15, 164, 215, 272, 320
DinI GGCGCC 1 cut(s) 361
DpnI GATC 6 cut(s) 113, 140, 279, 410, 442, 480
DpnII GATC 6 cut(s) 111, 138, 277, 408, 440, 478
DraIII CACNNNGTG 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 431, 446
EarI CTCTTC 2 cut(s) 431, 446
Eco47I GGWCC 2 cut(s) 334, 425
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FaqI GGGAC 2 cut(s) 233, 325
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 188, 233, 396
FokI GGATG 3 cut(s) 59, 266, 296
Fsp4HI GCNGC 3 cut(s) 188, 233, 396
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 188, 233, 396
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 3 cut(s) 171, 258, 360
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 158
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 82, 205, 295
Hpy166II GTNNAC 4 cut(s) 151, 178, 196, 390
Hpy188I TCNGA 2 cut(s) 111, 165
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 4 cut(s) 151, 178, 196, 390
Hpy99I CGWCG 2 cut(s) 173, 247
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 94, 296
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 124, 187, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 126, 473
HpyF3I CTNAG 5 cut(s) 15, 164, 215, 272, 320
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 3 cut(s) 171, 258, 360
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 360
KasI GGCGCC 1 cut(s) 359
Kzo9I GATC 6 cut(s) 111, 138, 277, 408, 440, 478
LmnI GCTCC 3 cut(s) 80, 212, 424
Lsp1109I GCAGC 2 cut(s) 199, 407
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 238
MalI GATC 6 cut(s) 113, 140, 279, 410, 442, 480
MbiI CCGCTC 1 cut(s) 207
MboI GATC 6 cut(s) 111, 138, 277, 408, 440, 478
MboII GAAGA 6 cut(s) 46, 148, 253, 259, 448, 463
MflI RGATCY 1 cut(s) 138
MluCI AATT 1 cut(s) 487
Mly113I GGCGCC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 190, 235
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 11, 126, 473
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 423
NdeII GATC 6 cut(s) 111, 138, 277, 408, 440, 478
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 76, 361
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 3 cut(s) 189, 234, 397
PluTI GGCGCC 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 76, 361
PspPI GGNCC 2 cut(s) 334, 425
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 119
Rsr2I CGGWCCG 1 cut(s) 425
RsrII CGGWCCG 1 cut(s) 425
SatI GCNGC 3 cut(s) 188, 233, 396
Sau3AI GATC 6 cut(s) 111, 138, 277, 408, 440, 478
Sau96I GGNCC 2 cut(s) 334, 425
ScrFI CCNGG 1 cut(s) 423
SetI ASST 8 cut(s) 57, 84, 90, 162, 192, 261, 273, 308
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 185
SfoI GGCGCC 1 cut(s) 361
SinI GGWCC 2 cut(s) 334, 425
SmiMI CAYNNNNRTG 1 cut(s) 119
SphI GCATGC 1 cut(s) 124
Sse9I AATT 1 cut(s) 487
SsiI CCGC 4 cut(s) 205, 233, 393, 460
SspDI GGCGCC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 94, 296
TaiI ACGT 1 cut(s) 261
TaqII GACCGA 1 cut(s) 442
TasI AATT 1 cut(s) 487
TauI GCSGC 1 cut(s) 235
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 187, 395
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 334, 425
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 200
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.