Prupe.3G121400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002484
Physical Location & Seq
Reverse (-)
10785956 .. 10787554
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G121400.1

Sequence Viewer

Length: 615 bp
ATGGCGATGGTGAGTGTGAGCAAAGTGAAAACGAGAGGCCCCAACCACAAGATGTCTCTGGAAGATTACCTTCTTCTCACTCAGTCTCACTCCAACCTCCATCTCACCGCATCAGATCTCAATCAGATCCTCGGCATGCACGGGTACAGGAAAATCCACGGACTCAACAAGCAACGTCTGATCGACGCCGTGAGCTCAATGTCCCTGGTCCAGCCGGCTCGCTCTACGCTCAAAGACGGCATCTCGCCGTTTGTAATCACGGCGCCAGAGGACGTCATCGCCGCCCTCGACGTGCTCAACTGGAAAGAGTGCTGCGTCACCTCCATTGAAACCCTAAGCTCATCGAAACACGCCCACTGCTCTCCTCCTCTTACAAGCCCCTGCTCCGACGTCGCCAAGCACAACAAGCATCAGCAATCGTCGCCCTTACCCCTGAATTCGGTAGCCTACGGCGTAGTTTCCGCTCTGGACGGTGCTTCCTTGTCCTCTGGGGCTTCTGAGACCACTCATCCGGCGAAGGAGTCGGTGCAGGAGAGAAAGAGGCAGAGGTCGCCGAGTTGCGGCGGTGGCGCCAATTCTACTGCTTTGGCCTGCGTTTCGTACGAAGCGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

21.72

Weight (kDa)

8.47

Isoelectric Point (pI)

68.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 276, 393
AccB1I GGYRCC 2 cut(s) 262, 569
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 5 cut(s) 108, 282, 462, 561, 564
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 436
AcyI GRCGYC 5 cut(s) 186, 263, 273, 390, 570
AfaI GTAC 2 cut(s) 146, 602
AfiI CCNNNNNNNGG 2 cut(s) 439, 560
AgsI TTSAA 1 cut(s) 329
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 2 cut(s) 195, 339
AluI AGCT 2 cut(s) 195, 339
Alw21I GWGCWC 2 cut(s) 197, 297
Alw26I GTCTC 3 cut(s) 60, 90, 494
AlwI GGATC 1 cut(s) 121
AoxI GGCC 2 cut(s) 37, 588
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 2 cut(s) 265, 572
AspS9I GGNCC 2 cut(s) 38, 208
AsuHPI GGTGA 3 cut(s) 22, 97, 310
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 2 cut(s) 262, 569
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 197, 297
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 108
BceAI ACGGC 5 cut(s) 173, 232, 253, 276, 466
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 60, 90, 494
BfoI RGCGCY 2 cut(s) 266, 573
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 282, 313, 562
BlsI GCNGC 3 cut(s) 283, 314, 563
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 38, 208
BmiI GGNNCC 3 cut(s) 40, 264, 571
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 3 cut(s) 119, 249, 418
Bpu10I CCTNAGC 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 5 cut(s) 186, 263, 273, 390, 570
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 130, 157, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 560
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 120
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 130, 157, 204
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 439, 560
BseMII CTCAG 2 cut(s) 95, 489
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 354, 357
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 2 cut(s) 39, 590
BshNI GGYRCC 2 cut(s) 262, 569
BsiHKAI GWGCWC 2 cut(s) 197, 297
BsiSI CCGG 2 cut(s) 215, 512
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 439, 560
BsmAI GTCTC 3 cut(s) 60, 90, 494
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 2 cut(s) 39, 590
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 197, 297
Bsp143I GATC 3 cut(s) 115, 126, 180
BspACI CCGC 5 cut(s) 108, 282, 462, 561, 564
BspANI GGCC 2 cut(s) 39, 590
BspCNI CTCAG 2 cut(s) 94, 490
BspLI GGNNCC 3 cut(s) 40, 264, 571
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 2 cut(s) 262, 569
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 130, 157, 204
BssMI GATC 3 cut(s) 115, 126, 180
BssNI GRCGYC 5 cut(s) 186, 263, 273, 390, 570
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 473
BstACI GRCGYC 5 cut(s) 186, 263, 273, 390, 570
BstC8I GCNNGC 5 cut(s) 137, 216, 220, 592, 610
BstDEI CTNAG 3 cut(s) 81, 335, 498
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 2 cut(s) 266, 573
BstHHI GCGC 2 cut(s) 265, 572
BstKTI GATC 3 cut(s) 118, 129, 183
BstMAI GTCTC 3 cut(s) 60, 90, 494
BstMBI GATC 3 cut(s) 115, 126, 180
BstMWI GCNNNNNNNGC 4 cut(s) 406, 421, 550, 567
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 115, 126
BstYI RGATCY 2 cut(s) 115, 126
BsuRI GGCC 2 cut(s) 39, 590
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 2 cut(s) 20, 262
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 5 cut(s) 137, 216, 220, 592, 610
CfoI GCGC 2 cut(s) 265, 572
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 38, 208
CseI GACGC 2 cut(s) 194, 304
Csp6I GTAC 2 cut(s) 145, 601
CviAII CATG 1 cut(s) 136
CviJI RGCY 9 cut(s) 39, 195, 214, 218, 339, 378, 446, 494, 590
CviKI_1 RGCY 9 cut(s) 39, 195, 214, 218, 339, 378, 446, 494, 590
CviQI GTAC 2 cut(s) 145, 601
DdeI CTNAG 3 cut(s) 81, 335, 498
DinI GGCGCC 2 cut(s) 264, 571
DpnI GATC 3 cut(s) 117, 128, 182
DpnII GATC 3 cut(s) 115, 126, 180
Ecl136II GAGCTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 2 cut(s) 264, 571
EheI GGCGCC 2 cut(s) 264, 571
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 282, 313, 562
FokI GGATG 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 282, 313, 562
GlaI GCGC 2 cut(s) 264, 571
GluI GCNGC 3 cut(s) 282, 313, 562
HaeII RGCGCY 2 cut(s) 266, 573
HaeIII GGCC 2 cut(s) 39, 590
HapII CCGG 2 cut(s) 215, 512
HgaI GACGC 2 cut(s) 194, 304
HhaI GCGC 2 cut(s) 265, 572
Hin1I GRCGYC 5 cut(s) 186, 263, 273, 390, 570
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 263, 570
HinP1I GCGC 2 cut(s) 263, 570
HinfI GANTC 2 cut(s) 162, 521
HpaII CCGG 2 cut(s) 215, 512
HphI GGTGA 3 cut(s) 22, 97, 310
Hpy188I TCNGA 5 cut(s) 115, 126, 180, 388, 499
Hpy188III TCNNGA 2 cut(s) 59, 467
Hpy99I CGWCG 5 cut(s) 188, 293, 392, 395, 424
HpyAV CCTTC 2 cut(s) 80, 511
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 4 cut(s) 175, 273, 291, 390
HpyCH4V TGCA 2 cut(s) 139, 529
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 421, 550, 567
HpyF3I CTNAG 3 cut(s) 81, 335, 498
HpySE526I ACGT 4 cut(s) 175, 273, 291, 390
Hsp92I GRCGYC 5 cut(s) 186, 263, 273, 390, 570
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 263, 570
KasI GGCGCC 2 cut(s) 262, 569
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 115, 126, 180
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 119, 249, 418
MaeII ACGT 4 cut(s) 175, 273, 291, 390
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 117, 128, 182
MbiI CCGCTC 1 cut(s) 464
MboI GATC 3 cut(s) 115, 126, 180
MboII GAAGA 2 cut(s) 65, 74
MflI RGATCY 2 cut(s) 115, 126
MhlI GDGCHC 2 cut(s) 197, 297
MluCI AATT 2 cut(s) 436, 574
Mly113I GGCGCC 2 cut(s) 263, 570
MlyI GAGTC 2 cut(s) 156, 530
MmeI TCCRAC 2 cut(s) 117, 411
MroNI GCCGGC 1 cut(s) 214
MspI CCGG 2 cut(s) 215, 512
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 406, 421, 550, 567
NaeI GCCGGC 1 cut(s) 216
NarI GGCGCC 2 cut(s) 263, 570
NdeII GATC 3 cut(s) 115, 126, 180
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 3 cut(s) 40, 264, 571
NmeAIII GCCGAG 2 cut(s) 111, 579
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 605
PdiI GCCGGC 1 cut(s) 216
Pfl23II CGTACG 1 cut(s) 600
PkrI GCNGC 3 cut(s) 283, 314, 563
PleI GAGTC 2 cut(s) 156, 529
PluTI GGCGCC 2 cut(s) 266, 573
PpsI GAGTC 2 cut(s) 156, 529
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspLI CGTACG 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 40, 264, 571
PspPI GGNCC 2 cut(s) 38, 208
PsuI RGATCY 2 cut(s) 115, 126
RsaI GTAC 2 cut(s) 146, 602
RsaNI GTAC 2 cut(s) 145, 601
SacI GAGCTC 1 cut(s) 197
SatI GCNGC 3 cut(s) 282, 313, 562
Sau3AI GATC 3 cut(s) 115, 126, 180
Sau96I GGNCC 2 cut(s) 38, 208
SchI GAGTC 2 cut(s) 156, 530
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 197, 297
SfaNI GCATC 3 cut(s) 119, 249, 418
SfoI GGCGCC 2 cut(s) 264, 571
SinI GGWCC 1 cut(s) 208
SphI GCATGC 1 cut(s) 139
Sse9I AATT 2 cut(s) 436, 574
SsiI CCGC 5 cut(s) 108, 282, 462, 561, 564
SspDI GGCGCC 2 cut(s) 262, 569
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 4 cut(s) 178, 276, 294, 393
TaqI TCGA 3 cut(s) 183, 288, 344
TasI AATT 2 cut(s) 436, 574
TauI GCSGC 2 cut(s) 284, 564
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 436
XceI RCATGY 1 cut(s) 139
ZraI GACGTC 2 cut(s) 274, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.