Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0002484

Physical Location & Seq

Genomic Coordinates Forward (+)

67203 .. 68527

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ctggtggaaccgagccgctctacgctccgggactacatctcgccgccggtcaacacttttctgaacgacgtcgtcgcggacatgaacgacctgagctggcaggagtgctgcgtcaccgccatcaaaacgctgagctcgtgtcaactaaacgacgccgtcgagtgctcgaagagccaccaatcgcctaccacggctctggattcccacggcggcggcgtttccggtactacatttcagggaagggctgagccgttgaggaaactggtgcagtggaagaagagacgggctcaggagagcgctgatccggtggtgaagaggcagaggatgagatcggaaagcgacggtggtggtggcgccgccgccgctcttgcttgtgattgtaagcttctgagcgacgccgtgaactcactgcagctggtgaacccgtgccgctccacgcttagggactacatctcgccgttggtgacgacgaagatggaggacgtcttcgccgacctcagcgatctcaactggcaagactgttgcatcacctccatccaaaccctcagttcgtgggaggaccagtcccctcctcccccaaacggcgccgtccagttccaacactactcgccgtccaccgcagcccacagcgtgatcgtttctgctcccggaccgaccaagaagagatcggcgaggaagaggaagcggactgctaaagtggccgatctggtaaatttcgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.08

Weight (kDa)

8.38

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06320
fragaria_vesca	FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27231
malus_domestica	MD08G1181200.v1.1 MD09G1238400.v1.1
prunus_persica	Prupe.3G117900_v2.0.a1 Prupe.3G121400_v2.0.a1
pyrus_communis	pycom17g23480
rosa_chinensis	RchiOBHm_Chr2g0129291 RchiOBHm_Chr2g0129301 RchiOBHm_Chr2g0129361
rosa_laevigata	RLG00000019071 RLG00000019072 RLG00000019073
rosa_multiflora	Rmu_co8026068.1_g000001 Rmu_sc0001171.1_g000003 Rmu_sc0005230.1_g000012 Rmu_sc0005230.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114680 Rroxscaffold_2G00114700
rosa_rugosa	Rorug02G0286000 Rorug02G0286100
rosa_samantha	Rh2AG337900 Rh2AG338000 Rh2AG338100 Rh2BG345700 Rh2BG345800 Rh2BG346200 Rh2CG325600 Rh2CG325700 Rh2DG363200 Rh2DG363300 Rh2DG364000
rosa_wichuraiana	Rw0G002920 Rw2G027410 Rw2G027420 Rw2G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	72, 486
AccB1I	GGYRCC	2 cut(s)	353, 584
AccBSI	CCGCTC	3 cut(s)	18, 365, 432
AccII	CGCG	1 cut(s)	77
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	712
AcyI	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
AdeI	CACNNNGTG	1 cut(s)	631
AfaI	GTAC	1 cut(s)	226
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	441, 581
AluBI	AGCT	4 cut(s)	96, 135, 385, 415
AluI	AGCT	4 cut(s)	96, 135, 385, 415
Alw21I	GWGCWC	2 cut(s)	137, 167
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	699
ApeKI	GCWGC	3 cut(s)	108, 412, 620
ApoI	RAATTY	1 cut(s)	712
AspLEI	GCGC	3 cut(s)	299, 356, 587
AspS9I	GGNCC	2 cut(s)	559, 650
AsuC2I	CCSGG	2 cut(s)	29, 648
AsuHPI	GGTGA	5 cut(s)	106, 322, 430, 475, 520
AvaII	GGWCC	2 cut(s)	559, 650
BanI	GGYRCC	2 cut(s)	353, 584
BanII	GRGCYC	2 cut(s)	137, 289
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	2 cut(s)	137, 167
BbvCI	CCTCAGC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	95, 424, 632
BccI	CCATC	3 cut(s)	128, 469, 542
BceAI	ACGGC	9 cut(s)	140, 207, 223, 235, 383, 442, 572, 595, 598
BcnI	CCSGG	2 cut(s)	29, 648
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	3 cut(s)	300, 357, 588
BlpI	GCTNAGC	2 cut(s)	131, 246
Bme1390I	CCNGG	2 cut(s)	29, 648
Bme18I	GGWCC	2 cut(s)	559, 650
BmgT120I	GGNCC	2 cut(s)	559, 650
BmiI	GGNNCC	3 cut(s)	9, 355, 586
BmrFI	CCNGG	2 cut(s)	29, 648
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	4 cut(s)	92, 288, 440, 497
Bpu1102I	GCTNAGC	2 cut(s)	131, 246
BpuMI	CCSGG	2 cut(s)	29, 648
BsaHI	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
BsaJI	CCNNGG	2 cut(s)	189, 205
BsaWI	WCCGGW	2 cut(s)	221, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 581
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	4 cut(s)	267, 515, 562, 592
BseDI	CCNNGG	2 cut(s)	189, 205
BseGI	GGATG	2 cut(s)	330, 534
BseLI	CCNNNNNNNGG	2 cut(s)	441, 581
BseMII	CTCAG	7 cut(s)	83, 122, 237, 302, 380, 511, 559
BseNI	ACTGG	4 cut(s)	267, 515, 562, 592
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	95, 424, 632
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	701
BshNI	GGYRCC	2 cut(s)	353, 584
BsiHKAI	GWGCWC	2 cut(s)	137, 167
BsiSI	CCGG	5 cut(s)	28, 47, 222, 305, 648
BslFI	GGGAC	3 cut(s)	44, 458, 550
BslI	CCNNNNNNNGG	2 cut(s)	441, 581
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	3 cut(s)	44, 458, 550
BsnI	GGCC	1 cut(s)	701
Bsp1286I	GDGCHC	3 cut(s)	137, 167, 289
Bsp143I	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
Bsp1720I	GCTNAGC	2 cut(s)	131, 246
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	7 cut(s)	84, 123, 238, 301, 381, 510, 558
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	9, 355, 586
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	353, 584
BsrBI	CCGCTC	3 cut(s)	18, 365, 432
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	267, 515, 562, 592
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	189, 205
BssMI	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
BssNI	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	344, 521
Bst6I	CTCTTC	5 cut(s)	164, 272, 308, 656, 671
BstACI	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	8 cut(s)	92, 131, 246, 288, 389, 440, 497, 545
BstDSI	CCRYGG	2 cut(s)	189, 205
BstF5I	GGATG	2 cut(s)	330, 534
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	3 cut(s)	300, 357, 588
BstHHI	GCGC	3 cut(s)	299, 356, 587
BstKTI	GATC	6 cut(s)	304, 332, 505, 636, 668, 706
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 362, 368, 698
BstSCI	CCNGG	2 cut(s)	27, 646
BstSFI	CTRYAG	1 cut(s)	410
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	95, 424, 632
BstV2I	GAAGAC	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	701
BtgI	CCRYGG	2 cut(s)	189, 205
BtsCI	GGATG	2 cut(s)	330, 534
BtsI	GCAGTG	2 cut(s)	275, 407
BtsIMutI	CAGTG	2 cut(s)	275, 407
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	3 cut(s)	299, 356, 587
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	559, 650
CpoI	CGGWCCG	1 cut(s)	650
CseI	GACGC	3 cut(s)	100, 161, 404
Csp6I	GTAC	1 cut(s)	225
CspI	CGGWCCG	1 cut(s)	650
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	8 cut(s)	92, 131, 246, 288, 389, 440, 497, 545
DinI	GGCGCC	2 cut(s)	355, 586
DpnI	GATC	6 cut(s)	303, 331, 504, 635, 667, 705
DpnII	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
DraIII	CACNNNGTG	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	5 cut(s)	164, 272, 308, 656, 671
EarI	CTCTTC	5 cut(s)	164, 272, 308, 656, 671
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	137, 289
Eco47I	GGWCC	2 cut(s)	559, 650
Eco47III	AGCGCT	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	137, 289
EgeI	GGCGCC	2 cut(s)	355, 586
EheI	GGCGCC	2 cut(s)	355, 586
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	3 cut(s)	44, 458, 550
FatI	CATG	1 cut(s)	81
FokI	GGATG	2 cut(s)	337, 521
FriOI	GRGCYC	2 cut(s)	137, 289
GlaI	GCGC	3 cut(s)	298, 355, 586
HaeII	RGCGCY	3 cut(s)	300, 357, 588
HaeIII	GGCC	1 cut(s)	701
HapII	CCGG	5 cut(s)	28, 47, 222, 305, 648
HgaI	GACGC	3 cut(s)	100, 161, 404
HhaI	GCGC	3 cut(s)	299, 356, 587
Hin1I	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	3 cut(s)	297, 354, 585
HinP1I	GCGC	3 cut(s)	297, 354, 585
HincII	GTYRAC	2 cut(s)	52, 143
HindII	GTYRAC	2 cut(s)	52, 143
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	5 cut(s)	28, 47, 222, 305, 648
HphI	GGTGA	5 cut(s)	106, 322, 430, 475, 520
Hpy166II	GTNNAC	5 cut(s)	52, 143, 403, 421, 615
Hpy188I	TCNGA	3 cut(s)	63, 334, 390
Hpy188III	TCNNGA	2 cut(s)	197, 290
Hpy8I	GTNNAC	5 cut(s)	52, 143, 403, 421, 615
Hpy99I	CGWCG	8 cut(s)	71, 74, 77, 155, 161, 344, 398, 472
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	344, 521
HpyCH4IV	ACGT	2 cut(s)	69, 483
HpyCH4V	TGCA	3 cut(s)	268, 412, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 362, 368, 698
HpyF3I	CTNAG	8 cut(s)	92, 131, 246, 288, 389, 440, 497, 545
HpySE526I	ACGT	2 cut(s)	69, 483
Hsp92I	GRCGYC	6 cut(s)	69, 153, 354, 396, 483, 585
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	3 cut(s)	297, 354, 585
KasI	GGCGCC	2 cut(s)	353, 584
Kzo9I	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	3 cut(s)	30, 437, 649
Lsp1109I	GCAGC	3 cut(s)	95, 424, 632
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	2 cut(s)	69, 483
MaeIII	GTNAC	2 cut(s)	112, 463
MalI	GATC	6 cut(s)	303, 331, 504, 635, 667, 705
MbiI	CCGCTC	3 cut(s)	18, 365, 432
MboI	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
MboII	GAAGA	8 cut(s)	181, 286, 289, 325, 478, 484, 673, 688
MhlI	GDGCHC	3 cut(s)	137, 167, 289
MluCI	AATT	1 cut(s)	712
Mly113I	GGCGCC	2 cut(s)	354, 585
MmeI	TCCRAC	1 cut(s)	622
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	5 cut(s)	28, 47, 222, 305, 648
MspR9I	CCNGG	2 cut(s)	29, 648
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	171, 362, 368, 698
NarI	GGCGCC	2 cut(s)	354, 585
NciI	CCSGG	2 cut(s)	29, 648
NdeII	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	9, 355, 586
NmuCI	GTSAC	2 cut(s)	112, 463
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	4 cut(s)	134, 156, 213, 489
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	2 cut(s)	71, 155
PfoI	TCCNGGA	2 cut(s)	27, 646
PluTI	GGCGCC	2 cut(s)	357, 588
Psp124BI	GAGCTC	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	9, 355, 586
PspPI	GGNCC	2 cut(s)	559, 650
PstI	CTGCAG	1 cut(s)	414
PsyI	GACNNNGTC	2 cut(s)	71, 155
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
Rsr2I	CGGWCCG	1 cut(s)	650
RsrII	CGGWCCG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	164
Sau3AI	GATC	6 cut(s)	301, 329, 502, 633, 665, 703
Sau96I	GGNCC	2 cut(s)	559, 650
ScrFI	CCNGG	2 cut(s)	29, 648
SduI	GDGCHC	3 cut(s)	137, 167, 289
SetI	ASST	9 cut(s)	72, 93, 98, 137, 387, 417, 486, 498, 533
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	410
SfoI	GGCGCC	2 cut(s)	355, 586
SinI	GGWCC	2 cut(s)	559, 650
Sse9I	AATT	1 cut(s)	712
SspDI	GGCGCC	2 cut(s)	353, 584
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	27, 646
TaaI	ACNGT	2 cut(s)	344, 521
TaiI	ACGT	2 cut(s)	72, 486
TaqI	TCGA	2 cut(s)	159, 167
TaqII	GACCGA	1 cut(s)	667
TasI	AATT	1 cut(s)	712
TauI	GCSGC	8 cut(s)	18, 46, 213, 216, 359, 362, 365, 432
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	2 cut(s)	275, 414
TseFI	GTSAC	2 cut(s)	112, 463
TseI	GCWGC	3 cut(s)	108, 412, 620
Tsp45I	GTSAC	2 cut(s)	112, 463
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	275, 414
Tth111I	GACNNNGTC	2 cut(s)	71, 155
VpaK11BI	GGWCC	2 cut(s)	559, 650
XapI	RAATTY	1 cut(s)	712
ZraI	GACGTC	2 cut(s)	70, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.