RchiOBHm_Chr2g0129301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002484
Physical Location & Seq
Forward (+)
44957200 .. 44958782
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50095

Sequence Viewer

Length: 471 bp
ATGGAGATGGCGAGCAAGGCTAAGAATAACGCGAATGCGAAGATGTCTCTGGATGATTACCTCCTTCTCCTCCAGTCTGGCTCCCACCTCCACCTCACCGTCAGCCATCTCAATCAGATCATCAGCATGCACGGCTACAAGAAGATCCACAAAGTTCACAAGCTGTTGAACCCGTGCCGCTCCACGCTTAGGGACTACATCTCGCCGTTTGTGACGACGAAGATGGATGACGTCTTCGCCGACCTCAGCGATCTCAACTGGCAAGACTGTTGCATCACCTCCATCCATACCCTCAGTTCGTGGGAGGACCAGTCCCCTCCTCCCCCAAACGGCGCCGTCCAGTTCCAACACTACTCGCCGTCCACCGCAGCCCACAGCGTGATCGTTTCTGCTCCCGGACCGACCAAGAAGAGATCGGCGCGGAAGAGGAAGCGGACTGCTAAAGTGGCCGATCTGGTAAATTTCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.41

Weight (kDa)

9.45

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 12 - 54 4.4e-18 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 180
AccII CGCG 2 cut(s) 32, 421
AciI CCGC 4 cut(s) 178, 366, 421, 433
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 460
AcyI GRCGYC 2 cut(s) 231, 333
AdeI CACNNNGTG 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 189, 329
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 2 cut(s) 335, 421
AspS9I GGNCC 2 cut(s) 307, 398
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 88, 268
AvaII GGWCC 2 cut(s) 307, 398
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 380
BccI CCATC 3 cut(s) 114, 217, 290
BceAI ACGGC 5 cut(s) 148, 190, 320, 343, 346
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 2 cut(s) 178, 369
BlsI GCNGC 2 cut(s) 179, 370
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 2 cut(s) 307, 398
BmgT120I GGNCC 2 cut(s) 307, 398
BmiI GGNNCC 2 cut(s) 82, 334
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 2 cut(s) 188, 245
BpuMI CCSGG 1 cut(s) 396
BsaHI GRCGYC 2 cut(s) 231, 333
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 329
Bse1I ACTGG 4 cut(s) 73, 263, 310, 340
BseGI GGATG 3 cut(s) 58, 232, 282
BseLI CCNNNNNNNGG 2 cut(s) 189, 329
BseMII CTCAG 2 cut(s) 259, 307
BseNI ACTGG 4 cut(s) 73, 263, 310, 340
BseRI GAGGAG 2 cut(s) 59, 309
BseXI GCAGC 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 32, 421
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 2 cut(s) 206, 298
BslI CCNNNNNNNGG 2 cut(s) 189, 329
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 2 cut(s) 206, 298
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 449
Bsp143I GATC 6 cut(s) 117, 144, 250, 381, 413, 451
BspACI CCGC 4 cut(s) 178, 366, 421, 433
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 258, 306
BspFNI CGCG 2 cut(s) 32, 421
BspLI GGNNCC 2 cut(s) 82, 334
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 180
BsrI ACTGG 4 cut(s) 73, 263, 310, 340
BssMI GATC 6 cut(s) 117, 144, 250, 381, 413, 451
BssNI GRCGYC 2 cut(s) 231, 333
Bst4CI ACNGT 2 cut(s) 100, 269
Bst6I CTCTTC 2 cut(s) 404, 419
BstACI GRCGYC 2 cut(s) 231, 333
BstC8I GCNNGC 2 cut(s) 13, 128
BstDEI CTNAG 4 cut(s) 21, 188, 245, 293
BstF5I GGATG 3 cut(s) 58, 232, 282
BstFNI CGCG 2 cut(s) 32, 421
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 335, 421
BstKTI GATC 6 cut(s) 120, 147, 253, 384, 416, 454
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 6 cut(s) 117, 144, 250, 381, 413, 451
BstMWI GCNNNNNNNGC 3 cut(s) 17, 132, 446
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 394
BstUI CGCG 2 cut(s) 32, 421
BstV1I GCAGC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 449
BtsCI GGATG 3 cut(s) 58, 232, 282
Cac8I GCNNGC 2 cut(s) 13, 128
CfoI GCGC 2 cut(s) 335, 421
Cfr13I GGNCC 2 cut(s) 307, 398
CpoI CGGWCCG 1 cut(s) 398
CspI CGGWCCG 1 cut(s) 398
CviAII CATG 1 cut(s) 127
CviJI RGCY 7 cut(s) 20, 81, 105, 135, 163, 371, 449
CviKI_1 RGCY 7 cut(s) 20, 81, 105, 135, 163, 371, 449
DdeI CTNAG 4 cut(s) 21, 188, 245, 293
DinI GGCGCC 1 cut(s) 334
DpnI GATC 6 cut(s) 119, 146, 252, 383, 415, 453
DpnII GATC 6 cut(s) 117, 144, 250, 381, 413, 451
DraIII CACNNNGTG 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 2 cut(s) 404, 419
EarI CTCTTC 2 cut(s) 404, 419
Eco47I GGWCC 2 cut(s) 307, 398
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 288
FaqI GGGAC 2 cut(s) 206, 298
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 178, 369
FokI GGATG 3 cut(s) 65, 239, 269
Fsp4HI GCNGC 2 cut(s) 178, 369
GlaI GCGC 2 cut(s) 334, 420
GluI GCNGC 2 cut(s) 178, 369
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 396
HhaI GCGC 2 cut(s) 335, 421
Hin1I GRCGYC 2 cut(s) 231, 333
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 333, 419
HinP1I GCGC 2 cut(s) 333, 419
HpaII CCGG 1 cut(s) 396
HphI GGTGA 2 cut(s) 88, 268
Hpy166II GTNNAC 2 cut(s) 157, 363
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 157, 363
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 100, 269
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 130, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 132, 446
HpyF3I CTNAG 4 cut(s) 21, 188, 245, 293
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 231, 333
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 333, 419
KasI GGCGCC 1 cut(s) 332
Kzo9I GATC 6 cut(s) 117, 144, 250, 381, 413, 451
LmnI GCTCC 3 cut(s) 86, 185, 397
LpnPI CCDG 8 cut(s) 35, 63, 86, 244, 323, 353, 409, 440
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 1 cut(s) 282
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 211
MalI GATC 6 cut(s) 119, 146, 252, 383, 415, 453
MbiI CCGCTC 1 cut(s) 180
MboI GATC 6 cut(s) 117, 144, 250, 381, 413, 451
MboII GAAGA 6 cut(s) 52, 154, 226, 232, 421, 436
MflI RGATCY 1 cut(s) 144
MluCI AATT 1 cut(s) 460
Mly113I GGCGCC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 40
MvnI CGCG 2 cut(s) 32, 421
MwoI GCNNNNNNNGC 3 cut(s) 17, 132, 446
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 1 cut(s) 396
NdeII GATC 6 cut(s) 117, 144, 250, 381, 413, 451
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 82, 334
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 130
PaeI GCATGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 2 cut(s) 179, 370
PluTI GGCGCC 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 82, 334
PspPI GGNCC 2 cut(s) 307, 398
PsuI RGATCY 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 125
Rsr2I CGGWCCG 1 cut(s) 398
RsrII CGGWCCG 1 cut(s) 398
SatI GCNGC 2 cut(s) 178, 369
Sau3AI GATC 6 cut(s) 117, 144, 250, 381, 413, 451
Sau96I GGNCC 2 cut(s) 307, 398
ScrFI CCNGG 1 cut(s) 396
SetI ASST 7 cut(s) 63, 90, 96, 165, 234, 246, 281
SfaNI GCATC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 334
SinI GGWCC 2 cut(s) 307, 398
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 130
Sse9I AATT 1 cut(s) 460
SsiI CCGC 4 cut(s) 178, 366, 421, 433
SspDI GGCGCC 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 100, 269
TaiI ACGT 1 cut(s) 234
TaqII GACCGA 1 cut(s) 415
TasI AATT 1 cut(s) 460
TauI GCSGC 1 cut(s) 180
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 307, 398
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 130
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.