RLG00000019072

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002484
Physical Location & Seq
Forward (+)
45946405 .. 45947019
615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019072

Sequence Viewer

Length: 393 bp
ATGATGGAGATGGTGAATACCATCAGCGTGCACAGATTCAAGAAGCTTCACAGACTTCACAAGAAAGTTCTAAGCGACGCCGTGATCACACTGGACCTGGTGGAACCGAGTTGCTCTACGCTCGGGGACTACATCTCGCTGCTGGTCAACAGTTCTTGTCTGAAAGACGTCGTCGTGGACATTAACGACCTGAGCTGGCAAGAGTGCCGCATCACTGCCATCAAAACGCTGAGCTTATGTCAACTAAACAATGTCGTCGAGTGCTCCATGTATCACCAATCACCTCTTGTGGCTTTGGATTCCCACGCCGGCGGCGTTTTCGGTACTACATTTCAGGGAAGGGCTGAGCCTTTGAAGAAATTGGTAACACTGCCTCTCAAAGTTGTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

7.68

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 8 - 34 5.2e-07 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AciI CCGC 2 cut(s) 208, 312
AcyI GRCGYC 2 cut(s) 78, 168
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 2 cut(s) 40, 355
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 3 cut(s) 46, 195, 234
AluI AGCT 3 cut(s) 46, 195, 234
Alw21I GWGCWC 2 cut(s) 33, 266
Alw44I GTGCAC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 25, 266, 273
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 33, 266
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 4, 29, 227
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 98
BclI TGATCA 1 cut(s) 84
BisI GCNGC 3 cut(s) 140, 208, 313
BlpI GCTNAGC 2 cut(s) 230, 345
BlsI GCNGC 3 cut(s) 141, 209, 314
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 191
Bpu1102I GCTNAGC 2 cut(s) 230, 345
BsaHI GRCGYC 2 cut(s) 78, 168
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 182, 221, 336
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 33, 266
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 33, 266
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 2 cut(s) 230, 345
BspACI CCGC 2 cut(s) 208, 312
BspCNI CTCAG 3 cut(s) 183, 222, 337
BspLI GGNNCC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 2 cut(s) 78, 168
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 2 cut(s) 78, 168
BstC8I GCNNGC 3 cut(s) 29, 197, 310
BstDEI CTNAG 4 cut(s) 71, 191, 230, 345
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 126
BtsI GCAGTG 2 cut(s) 213, 368
BtsIMutI CAGTG 3 cut(s) 89, 213, 368
Cac8I GCNNGC 3 cut(s) 29, 197, 310
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 324
CviAII CATG 1 cut(s) 268
CviJI RGCY 6 cut(s) 46, 195, 234, 293, 344, 349
CviKI_1 RGCY 6 cut(s) 46, 195, 234, 293, 344, 349
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 4 cut(s) 71, 191, 230, 345
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 96
FaeI CATG 1 cut(s) 271
FaiI YATR 2 cut(s) 238, 269
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 140, 208, 313
Fsp4HI GCNGC 3 cut(s) 140, 208, 313
GluI GCNGC 3 cut(s) 140, 208, 313
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 2 cut(s) 78, 168
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 2 cut(s) 148, 242
HindII GTYRAC 2 cut(s) 148, 242
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 36, 299
HpaII CCGG 1 cut(s) 309
HphI GGTGA 3 cut(s) 25, 266, 273
Hpy166II GTNNAC 4 cut(s) 31, 148, 178, 242
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 4 cut(s) 31, 148, 178, 242
Hpy99I CGWCG 4 cut(s) 80, 173, 176, 260
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 4 cut(s) 71, 191, 230, 345
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 2 cut(s) 78, 168
Hsp92II CATG 1 cut(s) 271
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 8 cut(s) 77, 83, 110, 128, 181, 203, 320, 322
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 219
MabI ACCWGGT 1 cut(s) 96
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 33, 266
MluCI AATT 1 cut(s) 359
MnlI CCTC 2 cut(s) 294, 384
MreI CGCCGGCG 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NaeI GCCGGC 1 cut(s) 310
NdeII GATC 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 36, 299
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 141, 209, 314
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 140, 208, 313
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 2 cut(s) 33, 266
SetI ASST 7 cut(s) 48, 99, 171, 192, 197, 236, 286
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 1 cut(s) 219
SgrAI CRCCGGYG 1 cut(s) 308
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 359
SsiI CCGC 2 cut(s) 208, 312
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 359
TauI GCSGC 2 cut(s) 210, 315
TfiI GAWTC 2 cut(s) 36, 299
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 3 cut(s) 96, 220, 375
TseI GCWGC 1 cut(s) 139
TspRI CASTG 3 cut(s) 96, 220, 375
Tth111I GACNNNGTC 1 cut(s) 170
VneI GTGCAC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 94
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.