RLG00000019071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002484
Physical Location & Seq
Forward (+)
45915138 .. 45915936
799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019071

Sequence Viewer

Length: 609 bp
ATGATGGAGATGGTGAATGTAAGCCAACGCAAGACGAAAAGGCAGAGCGAGAAGATGTCTCTGGAAGACTACCTCCTTCTTATTCAGTCTCGCTCCAACCTCCACCTCACCGTCACTCACCTCAATCAGATCATCAGCATGCACGGATTCAAAAAACTTCACCGACTTCACAAGAAAGTTCTGAGCGACGCCGTTAGCACACTGGACCTGGTGGAACCAAGCCGCTCTACGCTTCGGGACTACACCTCGCCGCCGGTCAGCACTTGTCTGAACGACGTCGTCGCGGACATGAACGACCTGAGCTGGCAGGAGTGCTGCGTCACCGCCATCAAAACGCTGAGCTCGTGTCAACTAAACGACGCCGTCGAGTGCTCGAAGAGCCACCAATCGCCTCCCACGGCTGTGGATTCCCACGGCGGCGGCTTTTCCGGTATCACATTTCAGGGAAGGGCTGAGCCGTTGAAGAAATCGGTGCAGTGGAAGAAGAGACGGACTCAGGAGAGCGTTGATCCGGTGGTGAAGAGGCAGAGGATGAGATCGGAAAGCGACGGTGGTGGTGGTGGCGCCGCCGCTCTTGCTTTGGATTGTGTCTCGTTGGATTCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.3

Weight (kDa)

8.69

Isoelectric Point (pI)

67.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 16 - 71 1.2e-26 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 563
AccBSI CCGCTC 2 cut(s) 225, 572
AccII CGCG 1 cut(s) 284
AciI CCGC 8 cut(s) 223, 251, 284, 324, 417, 420, 567, 570
AclWI GGATC 1 cut(s) 503
AcyI GRCGYC 4 cut(s) 189, 276, 360, 564
AgsI TTSAA 2 cut(s) 151, 463
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 2 cut(s) 303, 342
AluI AGCT 2 cut(s) 303, 342
Alw21I GWGCWC 2 cut(s) 344, 374
Alw26I GTCTC 4 cut(s) 63, 93, 481, 595
AlwI GGATC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 6 cut(s) 25, 100, 110, 152, 313, 529
AvaII GGWCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 344, 374
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 4, 335
BceAI ACGGC 5 cut(s) 176, 347, 414, 430, 442
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 4 cut(s) 63, 93, 481, 595
BfoI RGCGCY 1 cut(s) 567
BisI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 567, 570
BlpI GCTNAGC 2 cut(s) 338, 453
BlsI GCNGC 7 cut(s) 224, 252, 317, 419, 422, 568, 571
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 216, 565
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 478, 510
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 2 cut(s) 338, 453
BsaHI GRCGYC 4 cut(s) 189, 276, 360, 564
BsaJI CCNNGG 2 cut(s) 396, 412
BsaWI WCCGGW 2 cut(s) 428, 511
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 396, 412
BseGI GGATG 1 cut(s) 537
BseMII CTCAG 5 cut(s) 173, 290, 329, 444, 509
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 344, 374
BsiSI CCGG 3 cut(s) 254, 429, 512
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 4 cut(s) 63, 93, 481, 595
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 344, 374
Bsp143I GATC 3 cut(s) 129, 508, 536
Bsp1720I GCTNAGC 2 cut(s) 338, 453
BspACI CCGC 8 cut(s) 223, 251, 284, 324, 417, 420, 567, 570
BspCNI CTCAG 5 cut(s) 174, 291, 330, 445, 508
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 216, 565
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 563
BsrBI CCGCTC 2 cut(s) 225, 572
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 396, 412
BssMI GATC 3 cut(s) 129, 508, 536
BssNI GRCGYC 4 cut(s) 189, 276, 360, 564
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 112, 551
Bst6I CTCTTC 3 cut(s) 371, 479, 515
BstACI GRCGYC 4 cut(s) 189, 276, 360, 564
BstC8I GCNNGC 2 cut(s) 140, 305
BstDEI CTNAG 5 cut(s) 182, 299, 338, 453, 495
BstDSI CCRYGG 2 cut(s) 396, 412
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 3 cut(s) 132, 511, 539
BstMAI GTCTC 4 cut(s) 63, 93, 481, 595
BstMBI GATC 3 cut(s) 129, 508, 536
BstMWI GCNNNNNNNGC 2 cut(s) 378, 575
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 396, 412
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 2 cut(s) 200, 482
Cac8I GCNNGC 2 cut(s) 140, 305
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 3 cut(s) 197, 307, 368
CsiI ACCWGGT 1 cut(s) 207
CviAII CATG 2 cut(s) 139, 289
CviJI RGCY 9 cut(s) 24, 222, 303, 342, 381, 401, 423, 452, 457
CviKI_1 RGCY 9 cut(s) 24, 222, 303, 342, 381, 401, 423, 452, 457
DdeI CTNAG 5 cut(s) 182, 299, 338, 453, 495
DinI GGCGCC 1 cut(s) 565
DpnI GATC 3 cut(s) 131, 510, 538
DpnII GATC 3 cut(s) 129, 508, 536
Eam1104I CTCTTC 3 cut(s) 371, 479, 515
EarI CTCTTC 3 cut(s) 371, 479, 515
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 565
EheI GGCGCC 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 2 cut(s) 142, 292
FaiI YATR 2 cut(s) 140, 290
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 138, 288
Fnu4HI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 567, 570
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 567, 570
GlaI GCGC 1 cut(s) 565
GluI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 567, 570
HaeII RGCGCY 1 cut(s) 567
HapII CCGG 3 cut(s) 254, 429, 512
HgaI GACGC 3 cut(s) 197, 307, 368
HhaI GCGC 1 cut(s) 566
Hin1I GRCGYC 4 cut(s) 189, 276, 360, 564
Hin1II CATG 2 cut(s) 142, 292
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 4 cut(s) 147, 407, 493, 599
HpaII CCGG 3 cut(s) 254, 429, 512
HphI GGTGA 6 cut(s) 25, 100, 110, 152, 313, 529
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 4 cut(s) 129, 183, 270, 541
Hpy188III TCNNGA 3 cut(s) 62, 236, 497
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 7 cut(s) 191, 278, 281, 284, 362, 368, 551
HpyAV CCTTC 2 cut(s) 86, 441
HpyCH4III ACNGT 2 cut(s) 112, 551
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 142, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 575
HpyF3I CTNAG 5 cut(s) 182, 299, 338, 453, 495
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 4 cut(s) 189, 276, 360, 564
Hsp92II CATG 2 cut(s) 142, 292
HspAI GCGC 1 cut(s) 564
KasI GGCGCC 1 cut(s) 563
Kzo9I GATC 3 cut(s) 129, 508, 536
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 207
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 112, 319
MalI GATC 3 cut(s) 131, 510, 538
MbiI CCGCTC 2 cut(s) 225, 572
MboI GATC 3 cut(s) 129, 508, 536
MboII GAAGA 7 cut(s) 64, 77, 388, 475, 493, 496, 532
MhlI GDGCHC 2 cut(s) 344, 374
Mly113I GGCGCC 1 cut(s) 564
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 2 cut(s) 120, 576
MnlI CCTC 8 cut(s) 83, 110, 116, 131, 256, 402, 516, 522
MslI CAYNNNNRTG 2 cut(s) 137, 401
MspI CCGG 3 cut(s) 254, 429, 512
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 378, 575
NarI GGCGCC 1 cut(s) 564
NdeII GATC 3 cut(s) 129, 508, 536
NlaIII CATG 2 cut(s) 142, 292
NlaIV GGNNCC 2 cut(s) 216, 565
NmuCI GTSAC 2 cut(s) 112, 319
NspI RCATGY 1 cut(s) 142
OliI CACNNNNGTG 1 cut(s) 401
PaeI GCATGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 3 cut(s) 341, 363, 599
PfeI GAWTC 3 cut(s) 147, 407, 599
PflFI GACNNNGTC 2 cut(s) 278, 362
PkrI GCNGC 7 cut(s) 224, 252, 317, 419, 422, 568, 571
PleI GAGTC 1 cut(s) 487
PluTI GGCGCC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 216, 565
PspPI GGNCC 1 cut(s) 205
PsyI GACNNNGTC 2 cut(s) 278, 362
RseI CAYNNNNRTG 2 cut(s) 137, 401
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 7 cut(s) 223, 251, 316, 418, 421, 567, 570
Sau3AI GATC 3 cut(s) 129, 508, 536
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 344, 374
SexAI ACCWGGT 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 565
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 137, 401
SphI GCATGC 1 cut(s) 142
SsiI CCGC 8 cut(s) 223, 251, 284, 324, 417, 420, 567, 570
SspDI GGCGCC 1 cut(s) 563
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 112, 551
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 366, 374
TauI GCSGC 6 cut(s) 225, 253, 420, 423, 569, 572
TfiI GAWTC 3 cut(s) 147, 407, 599
TscAI CASTG 2 cut(s) 207, 482
TseFI GTSAC 2 cut(s) 112, 319
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 112, 319
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 159, 505
TspRI CASTG 2 cut(s) 207, 482
Tth111I GACNNNGTC 2 cut(s) 278, 362
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 1 cut(s) 142
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.