Rh2BG345800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002484
Physical Location & Seq
Forward (+)
46507030 .. 46507731
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG345800.1

Sequence Viewer

Length: 504 bp
ATGGAGATGGCGAGCAAGGCTAAGAATAACGCGAATGCGAAGATGTCTCTGGATGATTACCTCCTTCTCCTCCAGTCTGGCTCCCACCTCCACCTCACCGTCAGCCATCTCAATCAGATCATCAGCATGCACGGCTACAAGAAGATCCACAAAGTTCACAAGAAGCTTCTGAGCGACGCCGTGAACTCACTGCAGCTGTTGAACCCGTGCCGCTCCACGCTTAGGGACTACATCTCGCCGTTTGTGACGACGAAGATGGATGACGTCTTCGCCGACCTCAGCGATCTCAACTGGCAAGACTGTTGCATCACCTCCATCCATACCCTCAGTTCGTGGGAGGACCAGTCCCCTCCTCCCCCAAACGGCGCCGTCCAGTTCCAACACTACTCGCCGTCCACCGCAGCCCACAGCGTGATCGTTTCTGCTCCCGGACCGACCAAGAAGAGATCGGCGCGGAAGAGGAAGCGGACTGCTAAAGTGGCCGATCTGGTAAATTTCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.58

Weight (kDa)

9.43

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 12 - 68 6.2e-24 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 2 cut(s) 32, 454
AciI CCGC 4 cut(s) 211, 399, 454, 466
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 493
AcyI GRCGYC 3 cut(s) 177, 264, 366
AdeI CACNNNGTG 1 cut(s) 412
AfiI CCNNNNNNNGG 2 cut(s) 222, 362
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 166, 196
AluI AGCT 2 cut(s) 166, 196
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 2 cut(s) 193, 401
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 2 cut(s) 368, 454
AspS9I GGNCC 2 cut(s) 340, 431
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 88, 301
AvaII GGWCC 2 cut(s) 340, 431
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 205, 413
BccI CCATC 3 cut(s) 114, 250, 323
BceAI ACGGC 6 cut(s) 148, 164, 223, 353, 376, 379
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 3 cut(s) 194, 211, 402
BlsI GCNGC 3 cut(s) 195, 212, 403
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 2 cut(s) 340, 431
BmgT120I GGNCC 2 cut(s) 340, 431
BmiI GGNNCC 2 cut(s) 82, 367
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 2 cut(s) 221, 278
BpuMI CCSGG 1 cut(s) 429
BsaHI GRCGYC 3 cut(s) 177, 264, 366
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 362
Bse1I ACTGG 4 cut(s) 73, 296, 343, 373
BseGI GGATG 3 cut(s) 58, 265, 315
BseLI CCNNNNNNNGG 2 cut(s) 222, 362
BseMII CTCAG 3 cut(s) 161, 292, 340
BseNI ACTGG 4 cut(s) 73, 296, 343, 373
BseRI GAGGAG 2 cut(s) 59, 342
BseXI GCAGC 2 cut(s) 205, 413
Bsh1236I CGCG 2 cut(s) 32, 454
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 2 cut(s) 239, 331
BslI CCNNNNNNNGG 2 cut(s) 222, 362
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 2 cut(s) 239, 331
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 482
Bsp143I GATC 6 cut(s) 117, 144, 283, 414, 446, 484
BspACI CCGC 4 cut(s) 211, 399, 454, 466
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 162, 291, 339
BspFNI CGCG 2 cut(s) 32, 454
BspLI GGNNCC 2 cut(s) 82, 367
BspMAI CTGCAG 1 cut(s) 195
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 213
BsrI ACTGG 4 cut(s) 73, 296, 343, 373
BssMI GATC 6 cut(s) 117, 144, 283, 414, 446, 484
BssNI GRCGYC 3 cut(s) 177, 264, 366
Bst4CI ACNGT 2 cut(s) 100, 302
Bst6I CTCTTC 2 cut(s) 437, 452
BstACI GRCGYC 3 cut(s) 177, 264, 366
BstC8I GCNNGC 2 cut(s) 13, 128
BstDEI CTNAG 5 cut(s) 21, 170, 221, 278, 326
BstF5I GGATG 3 cut(s) 58, 265, 315
BstFNI CGCG 2 cut(s) 32, 454
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 2 cut(s) 368, 454
BstKTI GATC 6 cut(s) 120, 147, 286, 417, 449, 487
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 6 cut(s) 117, 144, 283, 414, 446, 484
BstMWI GCNNNNNNNGC 3 cut(s) 17, 132, 479
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 191
BstUI CGCG 2 cut(s) 32, 454
BstV1I GCAGC 2 cut(s) 205, 413
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 3 cut(s) 58, 265, 315
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 13, 128
CfoI GCGC 2 cut(s) 368, 454
Cfr13I GGNCC 2 cut(s) 340, 431
CpoI CGGWCCG 1 cut(s) 431
CseI GACGC 1 cut(s) 185
CspI CGGWCCG 1 cut(s) 431
CviAII CATG 1 cut(s) 127
CviJI RGCY 8 cut(s) 20, 81, 105, 135, 166, 196, 404, 482
CviKI_1 RGCY 8 cut(s) 20, 81, 105, 135, 166, 196, 404, 482
DdeI CTNAG 5 cut(s) 21, 170, 221, 278, 326
DinI GGCGCC 1 cut(s) 367
DpnI GATC 6 cut(s) 119, 146, 285, 416, 448, 486
DpnII GATC 6 cut(s) 117, 144, 283, 414, 446, 484
DraIII CACNNNGTG 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 437, 452
EarI CTCTTC 2 cut(s) 437, 452
Eco47I GGWCC 2 cut(s) 340, 431
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 321
FaqI GGGAC 2 cut(s) 239, 331
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 194, 211, 402
FokI GGATG 3 cut(s) 65, 272, 302
Fsp4HI GCNGC 3 cut(s) 194, 211, 402
GlaI GCGC 2 cut(s) 367, 453
GluI GCNGC 3 cut(s) 194, 211, 402
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 429
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 368, 454
Hin1I GRCGYC 3 cut(s) 177, 264, 366
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 366, 452
HinP1I GCGC 2 cut(s) 366, 452
HindIII AAGCTT 1 cut(s) 164
HpaII CCGG 1 cut(s) 429
HphI GGTGA 2 cut(s) 88, 301
Hpy166II GTNNAC 3 cut(s) 157, 184, 396
Hpy188I TCNGA 2 cut(s) 117, 171
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 3 cut(s) 157, 184, 396
Hpy99I CGWCG 2 cut(s) 179, 253
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 100, 302
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 130, 193, 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 132, 479
HpyF3I CTNAG 5 cut(s) 21, 170, 221, 278, 326
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 3 cut(s) 177, 264, 366
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 366, 452
KasI GGCGCC 1 cut(s) 365
Kzo9I GATC 6 cut(s) 117, 144, 283, 414, 446, 484
LmnI GCTCC 3 cut(s) 86, 218, 430
LpnPI CCDG 8 cut(s) 35, 63, 86, 277, 356, 386, 442, 473
Lsp1109I GCAGC 2 cut(s) 205, 413
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 244
MalI GATC 6 cut(s) 119, 146, 285, 416, 448, 486
MbiI CCGCTC 1 cut(s) 213
MboI GATC 6 cut(s) 117, 144, 283, 414, 446, 484
MboII GAAGA 6 cut(s) 52, 154, 259, 265, 454, 469
MflI RGATCY 1 cut(s) 144
MluCI AATT 1 cut(s) 493
Mly113I GGCGCC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 403
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 40
MvnI CGCG 2 cut(s) 32, 454
MwoI GCNNNNNNNGC 3 cut(s) 17, 132, 479
NarI GGCGCC 1 cut(s) 366
NciI CCSGG 1 cut(s) 429
NdeII GATC 6 cut(s) 117, 144, 283, 414, 446, 484
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 82, 367
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 130
PaeI GCATGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 3 cut(s) 195, 212, 403
PluTI GGCGCC 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 82, 367
PspPI GGNCC 2 cut(s) 340, 431
PstI CTGCAG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 125
Rsr2I CGGWCCG 1 cut(s) 431
RsrII CGGWCCG 1 cut(s) 431
SatI GCNGC 3 cut(s) 194, 211, 402
Sau3AI GATC 6 cut(s) 117, 144, 283, 414, 446, 484
Sau96I GGNCC 2 cut(s) 340, 431
ScrFI CCNGG 1 cut(s) 429
SetI ASST 8 cut(s) 63, 90, 96, 168, 198, 267, 279, 314
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 367
SinI GGWCC 2 cut(s) 340, 431
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 130
Sse9I AATT 1 cut(s) 493
SsiI CCGC 4 cut(s) 211, 399, 454, 466
SspDI GGCGCC 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 100, 302
TaiI ACGT 1 cut(s) 267
TaqII GACCGA 1 cut(s) 448
TasI AATT 1 cut(s) 493
TauI GCSGC 1 cut(s) 213
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 193, 401
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 340, 431
XapI RAATTY 1 cut(s) 493
XceI RCATGY 1 cut(s) 130
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.