RLG00000019073

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002484
Physical Location & Seq
Forward (+)
45949330 .. 45950027
698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019073

Sequence Viewer

Length: 510 bp
ATGGCGAGCAAAGCTAAGAATAACGCGAATGCGAAGATGTCTCTGGATGATTACCTCCTCCTCATCCAGTCTCGCTCCCACCTCCACCTCACCGTCAGCCATCTCAATCAGATCATCAGCATGCACGGCTACAAGAAGATCCACAAAGTTCACAAGAAGCTTCTGAGCGACGCCGTGAACTCACTGCAGCTGGTGAACCCGTGCCGCTCCACGCTTAGGGACTACATCTCGCCGTTGGTGACGACGAAGATGGAGGACGTCACCGCCGACCTCAGCGTCCTCAACTGGCAAGACTGTTGCATCACCTCCATCCAAACCCTCAGTTCGTGGGAGGACCAGTCCTCTCCTCGCCGAAACGGCGCCGTCCAGTTCCAACACTACTCGCCGTCCACCGCTCCTTACTCCGCAGCTCACAGCGTGATCGTTTCTGCTCCCGGACCGACCAAGAAGAGATCGGCGCGGAAGAGGAAGCGGACTGCTAAAGTGGCGGATCTGGTAAATTTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.84

Weight (kDa)

9.89

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 10 - 66 1.3e-24 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 2 cut(s) 207, 395
AccII CGCG 2 cut(s) 26, 460
AciI CCGC 7 cut(s) 205, 264, 393, 405, 460, 472, 488
AclWI GGATC 2 cut(s) 133, 498
AcsI RAATTY 1 cut(s) 499
AcyI GRCGYC 3 cut(s) 171, 258, 360
AdeI CACNNNGTG 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 216
AluBI AGCT 4 cut(s) 14, 160, 190, 410
AluI AGCT 4 cut(s) 14, 160, 190, 410
Alw26I GTCTC 2 cut(s) 45, 75
AlwI GGATC 2 cut(s) 133, 498
ApeKI GCWGC 2 cut(s) 187, 407
ApoI RAATTY 1 cut(s) 499
AspLEI GCGC 2 cut(s) 362, 460
AspS9I GGNCC 2 cut(s) 334, 437
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 5 cut(s) 82, 205, 250, 253, 295
AvaII GGWCC 2 cut(s) 334, 437
BanI GGYRCC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 199, 419
BccI CCATC 3 cut(s) 108, 244, 317
BceAI ACGGC 6 cut(s) 142, 158, 217, 347, 370, 373
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 2 cut(s) 45, 75
BfmI CTRYAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 188, 205, 408
BlsI GCNGC 3 cut(s) 189, 206, 409
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 2 cut(s) 334, 437
BmgT120I GGNCC 2 cut(s) 334, 437
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 309
Bpu10I CCTNAGC 2 cut(s) 215, 272
BpuMI CCSGG 1 cut(s) 435
BsaHI GRCGYC 3 cut(s) 171, 258, 360
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 4 cut(s) 67, 290, 337, 367
BseGI GGATG 3 cut(s) 52, 63, 309
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 3 cut(s) 155, 286, 334
BseNI ACTGG 4 cut(s) 67, 290, 337, 367
BseRI GAGGAG 3 cut(s) 47, 50, 336
BseXI GCAGC 2 cut(s) 199, 419
Bsh1236I CGCG 2 cut(s) 26, 460
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 45, 75
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 34
Bsp143I GATC 5 cut(s) 111, 138, 420, 452, 490
BspACI CCGC 7 cut(s) 205, 264, 393, 405, 460, 472, 488
BspCNI CTCAG 3 cut(s) 156, 285, 333
BspFNI CGCG 2 cut(s) 26, 460
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 2 cut(s) 133, 498
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 2 cut(s) 207, 395
BsrI ACTGG 4 cut(s) 67, 290, 337, 367
BssMI GATC 5 cut(s) 111, 138, 420, 452, 490
BssNI GRCGYC 3 cut(s) 171, 258, 360
Bst4CI ACNGT 2 cut(s) 94, 296
Bst6I CTCTTC 2 cut(s) 443, 458
BstACI GRCGYC 3 cut(s) 171, 258, 360
BstC8I GCNNGC 2 cut(s) 7, 122
BstDEI CTNAG 5 cut(s) 15, 164, 215, 272, 320
BstF5I GGATG 3 cut(s) 52, 63, 309
BstFNI CGCG 2 cut(s) 26, 460
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 362, 460
BstKTI GATC 5 cut(s) 114, 141, 423, 455, 493
BstMAI GTCTC 2 cut(s) 45, 75
BstMBI GATC 5 cut(s) 111, 138, 420, 452, 490
BstMWI GCNNNNNNNGC 4 cut(s) 11, 126, 357, 485
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 2 cut(s) 26, 460
BstV1I GCAGC 2 cut(s) 199, 419
BstX2I RGATCY 2 cut(s) 138, 490
BstYI RGATCY 2 cut(s) 138, 490
BtsCI GGATG 3 cut(s) 52, 63, 309
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 7, 122
CfoI GCGC 2 cut(s) 362, 460
Cfr13I GGNCC 2 cut(s) 334, 437
CpoI CGGWCCG 1 cut(s) 437
CseI GACGC 2 cut(s) 179, 265
CspI CGGWCCG 1 cut(s) 437
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 14, 99, 129, 160, 190, 410
CviKI_1 RGCY 6 cut(s) 14, 99, 129, 160, 190, 410
DdeI CTNAG 5 cut(s) 15, 164, 215, 272, 320
DinI GGCGCC 1 cut(s) 361
DpnI GATC 5 cut(s) 113, 140, 422, 454, 492
DpnII GATC 5 cut(s) 111, 138, 420, 452, 490
DraIII CACNNNGTG 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 443, 458
EarI CTCTTC 2 cut(s) 443, 458
EciI GGCGGA 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 334, 437
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 188, 205, 408
FokI GGATG 3 cut(s) 50, 59, 296
Fsp4HI GCNGC 3 cut(s) 188, 205, 408
GlaI GCGC 2 cut(s) 361, 459
GluI GCNGC 3 cut(s) 188, 205, 408
HaeII RGCGCY 1 cut(s) 363
HapII CCGG 1 cut(s) 435
HgaI GACGC 2 cut(s) 179, 265
HhaI GCGC 2 cut(s) 362, 460
Hin1I GRCGYC 3 cut(s) 171, 258, 360
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 2 cut(s) 360, 458
HinP1I GCGC 2 cut(s) 360, 458
HindIII AAGCTT 1 cut(s) 158
HpaII CCGG 1 cut(s) 435
HphI GGTGA 5 cut(s) 82, 205, 250, 253, 295
Hpy166II GTNNAC 4 cut(s) 151, 178, 196, 390
Hpy188I TCNGA 2 cut(s) 111, 165
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 4 cut(s) 151, 178, 196, 390
Hpy99I CGWCG 2 cut(s) 173, 247
HpyCH4III ACNGT 2 cut(s) 94, 296
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 124, 187, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 126, 357, 485
HpyF3I CTNAG 5 cut(s) 15, 164, 215, 272, 320
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 3 cut(s) 171, 258, 360
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 2 cut(s) 360, 458
KasI GGCGCC 1 cut(s) 359
Kzo9I GATC 5 cut(s) 111, 138, 420, 452, 490
LmnI GCTCC 4 cut(s) 80, 212, 400, 436
LpnPI CCDG 8 cut(s) 29, 80, 176, 271, 350, 380, 448, 479
Lsp1109I GCAGC 2 cut(s) 199, 419
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 238, 259
MalI GATC 5 cut(s) 113, 140, 422, 454, 492
MbiI CCGCTC 2 cut(s) 207, 395
MboI GATC 5 cut(s) 111, 138, 420, 452, 490
MboII GAAGA 5 cut(s) 46, 148, 259, 460, 475
MflI RGATCY 2 cut(s) 138, 490
MluCI AATT 1 cut(s) 499
Mly113I GGCGCC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 397
MseI TTAA 1 cut(s) 508
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 2 cut(s) 26, 460
MwoI GCNNNNNNNGC 4 cut(s) 11, 126, 357, 485
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 435
NdeII GATC 5 cut(s) 111, 138, 420, 452, 490
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 238, 259
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 3 cut(s) 189, 206, 409
PluTI GGCGCC 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 2 cut(s) 334, 437
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 2 cut(s) 138, 490
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 119
Rsr2I CGGWCCG 1 cut(s) 437
RsrII CGGWCCG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 3 cut(s) 188, 205, 408
Sau3AI GATC 5 cut(s) 111, 138, 420, 452, 490
Sau96I GGNCC 2 cut(s) 334, 437
ScrFI CCNGG 1 cut(s) 435
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 185
SfoI GGCGCC 1 cut(s) 361
SinI GGWCC 2 cut(s) 334, 437
SmiMI CAYNNNNRTG 1 cut(s) 119
SphI GCATGC 1 cut(s) 124
Sse9I AATT 1 cut(s) 499
SsiI CCGC 7 cut(s) 205, 264, 393, 405, 460, 472, 488
SspDI GGCGCC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 94, 296
TaiI ACGT 1 cut(s) 261
TaqII GACCGA 1 cut(s) 454
TasI AATT 1 cut(s) 499
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 2 cut(s) 238, 259
TseI GCWGC 2 cut(s) 187, 407
Tsp45I GTSAC 2 cut(s) 238, 259
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 334, 437
XapI RAATTY 1 cut(s) 499
XceI RCATGY 1 cut(s) 124
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.