Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002484

Physical Location & Seq

Genomic Coordinates Forward (+)

31162456 .. 31163395

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGATGACAACCATGGAAATAATAGGCTAAATGGTCCAAATGGAGGAAGCCCTGAAAACCCATGTTTAAACAACAGCACTCCTGCTAGTAGCTGCAACTCCAACATTAATATTCACCACAATCATAATCAAAGTAACAATCACAATCACCACCACCACAGCAGCAATAAAGAACAAGACAGGTTTCTTCCCATTGCGAATGTGGGTCGCATTATGAAGAAAGTGATTCCGGGCAATGGAAAAATCTCGAAAGACGCAAAAGAGACTGTCCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACCGGTGAAGCCTCTGATAAATGTCAAAGGGAAAAGAGGAAGACCATTAACGGCGAAGACATCATATGGGCTATCACAACACTAGGCTTTGAGGATTACGTGCACCCTCTAAAATTGTACCTCCAAAAATATAGAGAGCTTGAAGGGGAGAAGCTAAATGTTCCAAAGCAACAAAGATTGGAGCAAAGGCTGCAGCAACAGCAACAACAGCAAGTAGTACAACAAGAACAAGAGCAACAAAGTATACCAAATTCGTATAGTGTATATTCATCGACGAGTCTCTTGTCTCAACCGACTTCTTTCATCACTACTCATCATCATGATCCCGCATTTTCGTTGCCTTTCTCGCCAAGCTCAATTCAAAAACAGCTACAGCCACAAGATCAGATTGATTCAGTGGGGCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.08

Weight (kDa)

6.38

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	51 - 127	2.3e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	63 - 127	6e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06320
fragaria_vesca	FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27220 FvH4_6g27231
malus_domestica	MD08G1181200.v1.1 MD09G1238400.v1.1
prunus_persica	Prupe.3G117900_v2.0.a1 Prupe.3G121400_v2.0.a1
pyrus_communis	pycom17g23480
rosa_chinensis	RchiOBHm_Chr2g0129291 RchiOBHm_Chr2g0129301 RchiOBHm_Chr2g0129361
rosa_laevigata	RLG00000019071 RLG00000019072 RLG00000019073
rosa_multiflora	Rmu_co8026068.1_g000001 Rmu_sc0001171.1_g000003 Rmu_sc0005230.1_g000012 Rmu_sc0005230.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114680 Rroxscaffold_2G00114700
rosa_rugosa	Rorug02G0286000 Rorug02G0286100
rosa_samantha	Rh2AG337900 Rh2AG338000 Rh2AG338100 Rh2BG345700 Rh2BG345800 Rh2BG346200 Rh2CG325600 Rh2CG325700 Rh2DG363200 Rh2DG363300 Rh2DG364000
rosa_wichuraiana	Rw0G002920 Rw2G027410 Rw2G027420 Rw2G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	550
AciI	CCGC	1 cut(s)	633
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	556
AfaI	GTAC	2 cut(s)	425, 525
AfiI	CCNNNNNNNGG	2 cut(s)	47, 239
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	449, 668
AluBI	AGCT	6 cut(s)	96, 300, 445, 460, 660, 676
AluI	AGCT	6 cut(s)	96, 300, 445, 460, 660, 676
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	3 cut(s)	260, 590, 597
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	623
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	4 cut(s)	96, 165, 496, 499
ApoI	RAATTY	1 cut(s)	556
AseI	ATTAAT	1 cut(s)	111
AsiGI	ACCGGT	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	110, 143, 298, 323
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	353, 369
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	4 cut(s)	83, 177, 483, 511
BceAI	ACGGC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	260, 590, 597
BfaI	CTAG	2 cut(s)	90, 389
BfmI	CTRYAG	2 cut(s)	497, 677
BisI	GCNGC	4 cut(s)	97, 166, 497, 500
BlsI	GCNGC	4 cut(s)	98, 167, 498, 501
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	234
BpiI	GAAGAC	2 cut(s)	353, 369
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 239
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	195, 244
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	47, 239
BseMI	GCAATG	2 cut(s)	195, 244
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	4 cut(s)	83, 177, 483, 511
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	233, 309
BslI	CCNNNNNNNGG	2 cut(s)	47, 239
BsmAI	GTCTC	3 cut(s)	260, 590, 597
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	628, 688
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	625
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	195, 244
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	628, 688
BssNAI	GTATAC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	631, 691
BstMAI	GTCTC	3 cut(s)	260, 590, 597
BstMBI	GATC	2 cut(s)	628, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 652
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	497, 677
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	4 cut(s)	83, 177, 483, 511
BstV2I	GAAGAC	2 cut(s)	353, 369
BstZ17I	GTATAC	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	708
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	424, 524
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	3 cut(s)	17, 66, 626
CviQI	GTAC	2 cut(s)	424, 524
DpnI	GATC	2 cut(s)	630, 690
DpnII	GATC	2 cut(s)	628, 688
DraI	TTTAAA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 69, 629
FatI	CATG	3 cut(s)	16, 65, 625
FauI	CCCGC	1 cut(s)	640
FauNDI	CATATG	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	97, 166, 497, 500
Fsp4HI	GCNGC	4 cut(s)	97, 166, 497, 500
FspBI	CTAG	2 cut(s)	90, 389
GluI	GCNGC	4 cut(s)	97, 166, 497, 500
HapII	CCGG	2 cut(s)	233, 309
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	20, 69, 629
HinfI	GANTC	3 cut(s)	229, 583, 698
HpaII	CCGG	2 cut(s)	233, 309
HphI	GGTGA	4 cut(s)	110, 143, 298, 323
Hpy166II	GTNNAC	2 cut(s)	409, 551
Hpy188I	TCNGA	3 cut(s)	289, 322, 693
Hpy188III	TCNNGA	2 cut(s)	250, 626
Hpy8I	GTNNAC	2 cut(s)	409, 551
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	99, 409, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 652
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	20, 69, 629
Kzo9I	GATC	2 cut(s)	628, 688
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	5 cut(s)	69, 99, 169, 246, 322
Lsp1109I	GCAGC	4 cut(s)	83, 177, 483, 511
MaeI	CTAG	2 cut(s)	90, 389
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	137, 304
MalI	GATC	2 cut(s)	630, 690
MboI	GATC	2 cut(s)	628, 688
MboII	GAAGA	5 cut(s)	17, 182, 232, 358, 374
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	419, 556, 663
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	41, 328, 336, 391, 423, 437
MseI	TTAA	3 cut(s)	71, 111, 354
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	2 cut(s)	233, 309
MspR9I	CCNGG	1 cut(s)	234
MssI	GTTTAAAC	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 652
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	2 cut(s)	628, 688
NlaIII	CATG	3 cut(s)	20, 69, 629
NmuCI	GTSAC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	229, 698
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	98, 167, 498, 501
PleI	GAGTC	1 cut(s)	591
PmeI	GTTTAAAC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	591
Ppu21I	YACGTR	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	425, 525
RsaNI	GTAC	2 cut(s)	424, 524
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	3 cut(s)	71, 111, 354
SatI	GCNGC	4 cut(s)	97, 166, 497, 500
Sau3AI	GATC	2 cut(s)	628, 688
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	9 cut(s)	98, 188, 302, 408, 429, 447, 462, 662, 678
SfcI	CTRYAG	2 cut(s)	497, 677
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	624
Sse9I	AATT	3 cut(s)	419, 556, 663
SsiI	CCGC	1 cut(s)	633
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	90, 389
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	251, 578
TasI	AATT	3 cut(s)	419, 556, 663
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	229, 698
Tru1I	TTAA	3 cut(s)	71, 111, 354
Tru9I	TTAA	3 cut(s)	71, 111, 354
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	96, 165, 496, 499
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	233, 283, 564, 598
TspRI	CASTG	1 cut(s)	708
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	2 cut(s)	90, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.