Rmu_co8026068.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8026068.1
OG0002484
Physical Location & Seq
Forward (+)
1 .. 488
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8026068.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
aaagttctgagcgacgccgtgagcacacttgacctggtggaaccgagccgctctacgctccgggactacatctcgccgccggtcaacacttttctgaacgacgtcgtcgcggacatgaacgacctgagctggcaggagtgctgcgtcaccgccatcaaaacgctgagctcgtgtcaactaaacgacgccgtcgagtgctcgaagagccaccaatcgcctcccacggctctggattcccacggcggcggcgtttccggtactacatttcagggaagggctgagccgttgaggaaactggtgcagtggaagaagagacgggctcaggagagcgctgatccggtggtgaagaggcagaggatgagatcggaaagcgacggtggtggtggcgccgccgccgctcttgcttgtgattgtgtctcgttggattcgtgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.4

Weight (kDa)

5.65

Isoelectric Point (pI)

71.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 386
AccBSI CCGCTC 2 cut(s) 51, 398
AccII CGCG 1 cut(s) 110
AciI CCGC 9 cut(s) 49, 77, 110, 150, 243, 246, 390, 393, 396
AclWI GGATC 1 cut(s) 329
AcyI GRCGYC 4 cut(s) 15, 102, 186, 387
AfaI GTAC 1 cut(s) 259
AfeI AGCGCT 1 cut(s) 331
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 129, 168
AluI AGCT 2 cut(s) 129, 168
Alw21I GWGCWC 3 cut(s) 26, 170, 200
Alw26I GTCTC 2 cut(s) 307, 421
AlwI GGATC 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 141
AspLEI GCGC 2 cut(s) 332, 389
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 139, 355
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 2 cut(s) 170, 322
BauI CACGAG 1 cut(s) 169
Bbv12I GWGCWC 3 cut(s) 26, 170, 200
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 161
BceAI ACGGC 5 cut(s) 2, 173, 240, 256, 268
BciT130I CCWGG 1 cut(s) 35
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 307, 421
BfoI RGCGCY 2 cut(s) 333, 390
BisI GCNGC 8 cut(s) 49, 77, 142, 244, 247, 390, 393, 396
BlpI GCTNAGC 2 cut(s) 164, 279
BlsI GCNGC 8 cut(s) 50, 78, 143, 245, 248, 391, 394, 397
Bme1390I CCNGG 2 cut(s) 35, 62
BmiI GGNNCC 2 cut(s) 42, 388
BmrFI CCNGG 2 cut(s) 35, 62
BplI GAGNNNNNCTC 2 cut(s) 304, 336
Bpu10I CCTNAGC 2 cut(s) 125, 321
Bpu1102I GCTNAGC 2 cut(s) 164, 279
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 4 cut(s) 15, 102, 186, 387
BsaJI CCNNGG 2 cut(s) 222, 238
BsaWI WCCGGW 2 cut(s) 254, 337
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 222, 238
BseGI GGATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 116, 155, 270, 335
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 3 cut(s) 26, 170, 200
BsiSI CCGG 4 cut(s) 61, 80, 255, 338
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 307, 421
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 77
Bsp1286I GDGCHC 4 cut(s) 26, 170, 200, 322
Bsp143I GATC 2 cut(s) 334, 362
Bsp1720I GCTNAGC 2 cut(s) 164, 279
BspACI CCGC 9 cut(s) 49, 77, 110, 150, 243, 246, 390, 393, 396
BspCNI CTCAG 4 cut(s) 117, 156, 271, 334
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 42, 388
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 386
BsrBI CCGCTC 2 cut(s) 51, 398
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 222, 238
BssMI GATC 2 cut(s) 334, 362
BssNI GRCGYC 4 cut(s) 15, 102, 186, 387
BssSI CACGAG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 3 cut(s) 197, 305, 341
BstACI GRCGYC 4 cut(s) 15, 102, 186, 387
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 5 cut(s) 8, 125, 164, 279, 321
BstDSI CCRYGG 2 cut(s) 222, 238
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 2 cut(s) 333, 390
BstHHI GCGC 2 cut(s) 332, 389
BstKTI GATC 2 cut(s) 337, 365
BstMAI GTCTC 2 cut(s) 307, 421
BstMBI GATC 2 cut(s) 334, 362
BstMWI GCNNNNNNNGC 3 cut(s) 204, 395, 401
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 33, 60
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 229
BtgI CCRYGG 2 cut(s) 222, 238
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 332, 389
Cfr10I RCCGGY 1 cut(s) 79
CseI GACGC 3 cut(s) 23, 133, 194
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 115
CviJI RGCY 8 cut(s) 48, 129, 168, 207, 227, 278, 283, 320
CviKI_1 RGCY 8 cut(s) 48, 129, 168, 207, 227, 278, 283, 320
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 5 cut(s) 8, 125, 164, 279, 321
DinI GGCGCC 1 cut(s) 388
DpnI GATC 2 cut(s) 336, 364
DpnII GATC 2 cut(s) 334, 362
Eam1104I CTCTTC 3 cut(s) 197, 305, 341
EarI CTCTTC 3 cut(s) 197, 305, 341
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 170, 322
Eco47III AGCGCT 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 170, 322
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 8 cut(s) 49, 77, 142, 244, 247, 390, 393, 396
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 2 cut(s) 170, 322
Fsp4HI GCNGC 8 cut(s) 49, 77, 142, 244, 247, 390, 393, 396
GlaI GCGC 2 cut(s) 331, 388
GluI GCNGC 8 cut(s) 49, 77, 142, 244, 247, 390, 393, 396
HaeII RGCGCY 2 cut(s) 333, 390
HapII CCGG 4 cut(s) 61, 80, 255, 338
HgaI GACGC 3 cut(s) 23, 133, 194
HhaI GCGC 2 cut(s) 332, 389
Hin1I GRCGYC 4 cut(s) 15, 102, 186, 387
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 2 cut(s) 330, 387
HinP1I GCGC 2 cut(s) 330, 387
HincII GTYRAC 2 cut(s) 85, 176
HindII GTYRAC 2 cut(s) 85, 176
HinfI GANTC 2 cut(s) 233, 425
HpaII CCGG 4 cut(s) 61, 80, 255, 338
HphI GGTGA 2 cut(s) 139, 355
Hpy166II GTNNAC 2 cut(s) 85, 176
Hpy188I TCNGA 3 cut(s) 9, 96, 367
Hpy188III TCNNGA 2 cut(s) 230, 323
Hpy8I GTNNAC 2 cut(s) 85, 176
Hpy99I CGWCG 7 cut(s) 17, 104, 107, 110, 188, 194, 377
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 395, 401
HpyF3I CTNAG 5 cut(s) 8, 125, 164, 279, 321
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 4 cut(s) 15, 102, 186, 387
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 2 cut(s) 330, 387
KasI GGCGCC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 334, 362
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 1 cut(s) 128
MabI ACCWGGT 1 cut(s) 33
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 336, 364
MbiI CCGCTC 2 cut(s) 51, 398
MboI GATC 2 cut(s) 334, 362
MboII GAAGA 4 cut(s) 214, 319, 322, 358
MhlI GDGCHC 4 cut(s) 26, 170, 200, 322
Mly113I GGCGCC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 4 cut(s) 228, 282, 342, 348
MspI CCGG 4 cut(s) 61, 80, 255, 338
MspR9I CCNGG 2 cut(s) 35, 62
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 204, 395, 401
NarI GGCGCC 1 cut(s) 387
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 334, 362
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 42, 388
NmuCI GTSAC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 4 cut(s) 167, 189, 246, 425
PfeI GAWTC 2 cut(s) 233, 425
PflFI GACNNNGTC 2 cut(s) 104, 188
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 8 cut(s) 50, 78, 143, 245, 248, 391, 394, 397
PluTI GGCGCC 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 42, 388
PsyI GACNNNGTC 2 cut(s) 104, 188
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SacI GAGCTC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 8 cut(s) 49, 77, 142, 244, 247, 390, 393, 396
Sau3AI GATC 2 cut(s) 334, 362
ScrFI CCNGG 2 cut(s) 35, 62
SduI GDGCHC 4 cut(s) 26, 170, 200, 322
SetI ASST 5 cut(s) 36, 105, 126, 131, 170
SexAI ACCWGGT 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 388
SsiI CCGC 9 cut(s) 49, 77, 110, 150, 243, 246, 390, 393, 396
SspDI GGCGCC 1 cut(s) 386
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 33, 60
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 192, 200
TauI GCSGC 7 cut(s) 51, 79, 246, 249, 392, 395, 398
TfiI GAWTC 2 cut(s) 233, 425
TscAI CASTG 1 cut(s) 308
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 308
Tth111I GACNNNGTC 2 cut(s) 104, 188
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.