Rh2CG325600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002484
Physical Location & Seq
Forward (+)
41987954 .. 41989240
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG325600.1

Sequence Viewer

Length: 612 bp
ATGATGGAGATGGTGCATGTAAGCCAACGCAAGACGAAAAGGCAAAGCGAGAAGATGTCTCTGGAAGACTACCTCCTTCTCATTCAGTCTCGCTCCAACCTCCACCTCACCGTCACTCACCTCAATCAGATCATCAGCATGCACGGATTCAAAAAACTTCACAGACTTCACAAGAAAGTTCTGAGCGACGCCGTGAGCACACTTGACCTGGTGGAACCGAGCCGCTCTACGCTCCGGGACTACATCTCGCCGCCGGTCAACACTTTTCTGAAGGACGTCGTCGCGGACATGAACGACCTGAGCTGGCAGGAGTGCTGCGTCACCGCCATCAAAACGCTGAGCTCGTGTCAACTAAACGACGCCGTCGAGTGCTCGAAGAGCCACCACCAATCGCCTCCCACGGCTCTGGATTCCCACGGCGGCGGCGTTTCCGGTACTACATTTCAGGGAAGGGCTGAGCCGTTGAGGAAACTGGTGCAGTGGAAGAAGAGACGGGCTCAGGAGAGCGCTGATCCGGCGGTGAAGAGGCAGAGGATGAGATCGGAAAGCGACGGTGGTGGTGGCGCCGCCGCCGCTCTTGCTTTGGATTGTGTCTCGTTGGATTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

9.01

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7787 PF25042 16 - 71 1.2e-26 Domain of unknown function (DUF7787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 563
AccBSI CCGCTC 2 cut(s) 225, 575
AccII CGCG 1 cut(s) 284
AclWI GGATC 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 4 cut(s) 189, 276, 360, 564
AfaI GTAC 1 cut(s) 436
AfeI AGCGCT 1 cut(s) 508
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 303, 342
AluI AGCT 2 cut(s) 303, 342
Alw21I GWGCWC 3 cut(s) 200, 344, 374
Alw26I GTCTC 4 cut(s) 63, 93, 484, 598
AlwI GGATC 1 cut(s) 506
Aor51HI AGCGCT 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 509, 566
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 100, 110, 313, 532
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 2 cut(s) 344, 499
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 3 cut(s) 200, 344, 374
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 4, 335
BceAI ACGGC 5 cut(s) 176, 347, 417, 433, 445
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 4 cut(s) 63, 93, 484, 598
BfoI RGCGCY 2 cut(s) 510, 567
BisI GCNGC 8 cut(s) 223, 251, 316, 421, 424, 567, 570, 573
BlpI GCTNAGC 2 cut(s) 338, 456
BlsI GCNGC 8 cut(s) 224, 252, 317, 422, 425, 568, 571, 574
Bme1390I CCNGG 2 cut(s) 209, 236
BmiI GGNNCC 2 cut(s) 216, 565
BmrFI CCNGG 2 cut(s) 209, 236
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 481, 513
Bpu10I CCTNAGC 2 cut(s) 299, 498
Bpu1102I GCTNAGC 2 cut(s) 338, 456
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 4 cut(s) 189, 276, 360, 564
BsaJI CCNNGG 2 cut(s) 399, 415
BsaWI WCCGGW 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 399, 415
BseGI GGATG 1 cut(s) 540
BseMII CTCAG 5 cut(s) 173, 290, 329, 447, 512
BseNI ACTGG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 3 cut(s) 200, 344, 374
BsiSI CCGG 4 cut(s) 235, 254, 432, 515
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 4 cut(s) 63, 93, 484, 598
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 4 cut(s) 200, 344, 374, 499
Bsp143I GATC 3 cut(s) 129, 511, 539
Bsp1720I GCTNAGC 2 cut(s) 338, 456
BspCNI CTCAG 5 cut(s) 174, 291, 330, 448, 511
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 216, 565
BspPI GGATC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 563
BsrBI CCGCTC 2 cut(s) 225, 575
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 477
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 399, 415
BssMI GATC 3 cut(s) 129, 511, 539
BssNI GRCGYC 4 cut(s) 189, 276, 360, 564
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 112, 554
Bst6I CTCTTC 3 cut(s) 371, 482, 518
BstACI GRCGYC 4 cut(s) 189, 276, 360, 564
BstC8I GCNNGC 2 cut(s) 140, 305
BstDEI CTNAG 5 cut(s) 182, 299, 338, 456, 498
BstDSI CCRYGG 2 cut(s) 399, 415
BstF5I GGATG 1 cut(s) 540
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 2 cut(s) 510, 567
BstHHI GCGC 2 cut(s) 509, 566
BstKTI GATC 3 cut(s) 132, 514, 542
BstMAI GTCTC 4 cut(s) 63, 93, 484, 598
BstMBI GATC 3 cut(s) 129, 511, 539
BstMWI GCNNNNNNNGC 4 cut(s) 378, 515, 572, 578
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 20, 142
BstSCI CCNGG 2 cut(s) 207, 234
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 406
BtgI CCRYGG 2 cut(s) 399, 415
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 140, 305
CfoI GCGC 2 cut(s) 509, 566
Cfr10I RCCGGY 1 cut(s) 253
CseI GACGC 3 cut(s) 197, 307, 368
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 17, 139, 289
CviJI RGCY 9 cut(s) 24, 222, 303, 342, 381, 404, 455, 460, 497
CviKI_1 RGCY 9 cut(s) 24, 222, 303, 342, 381, 404, 455, 460, 497
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 5 cut(s) 182, 299, 338, 456, 498
DinI GGCGCC 1 cut(s) 565
DpnI GATC 3 cut(s) 131, 513, 541
DpnII GATC 3 cut(s) 129, 511, 539
Eam1104I CTCTTC 3 cut(s) 371, 482, 518
EarI CTCTTC 3 cut(s) 371, 482, 518
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 344, 499
Eco47III AGCGCT 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 2 cut(s) 344, 499
EgeI GGCGCC 1 cut(s) 565
EheI GGCGCC 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 3 cut(s) 20, 142, 292
FaiI YATR 3 cut(s) 18, 140, 290
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 16, 138, 288
Fnu4HI GCNGC 8 cut(s) 223, 251, 316, 421, 424, 567, 570, 573
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 2 cut(s) 344, 499
Fsp4HI GCNGC 8 cut(s) 223, 251, 316, 421, 424, 567, 570, 573
GlaI GCGC 2 cut(s) 508, 565
GluI GCNGC 8 cut(s) 223, 251, 316, 421, 424, 567, 570, 573
HaeII RGCGCY 2 cut(s) 510, 567
HapII CCGG 4 cut(s) 235, 254, 432, 515
HgaI GACGC 3 cut(s) 197, 307, 368
HhaI GCGC 2 cut(s) 509, 566
Hin1I GRCGYC 4 cut(s) 189, 276, 360, 564
Hin1II CATG 3 cut(s) 20, 142, 292
Hin6I GCGC 2 cut(s) 507, 564
HinP1I GCGC 2 cut(s) 507, 564
HincII GTYRAC 2 cut(s) 259, 350
HindII GTYRAC 2 cut(s) 259, 350
HinfI GANTC 3 cut(s) 147, 410, 602
HpaII CCGG 4 cut(s) 235, 254, 432, 515
HphI GGTGA 4 cut(s) 100, 110, 313, 532
Hpy166II GTNNAC 2 cut(s) 259, 350
Hpy188I TCNGA 4 cut(s) 129, 183, 270, 544
Hpy188III TCNNGA 3 cut(s) 62, 407, 500
Hpy8I GTNNAC 2 cut(s) 259, 350
Hpy99I CGWCG 6 cut(s) 191, 281, 284, 362, 368, 554
HpyAV CCTTC 3 cut(s) 86, 265, 444
HpyCH4III ACNGT 2 cut(s) 112, 554
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 16, 142, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 378, 515, 572, 578
HpyF3I CTNAG 5 cut(s) 182, 299, 338, 456, 498
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 4 cut(s) 189, 276, 360, 564
Hsp92II CATG 3 cut(s) 20, 142, 292
HspAI GCGC 2 cut(s) 507, 564
KasI GGCGCC 1 cut(s) 563
Kzo9I GATC 3 cut(s) 129, 511, 539
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 2 cut(s) 98, 237
Lsp1109I GCAGC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 207
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 112, 319
MalI GATC 3 cut(s) 131, 513, 541
MbiI CCGCTC 2 cut(s) 225, 575
MboI GATC 3 cut(s) 129, 511, 539
MboII GAAGA 6 cut(s) 64, 77, 388, 496, 499, 535
MhlI GDGCHC 4 cut(s) 200, 344, 374, 499
Mly113I GGCGCC 1 cut(s) 564
MmeI TCCRAC 2 cut(s) 120, 579
MnlI CCTC 8 cut(s) 83, 110, 116, 131, 405, 459, 519, 525
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 4 cut(s) 235, 254, 432, 515
MspR9I CCNGG 2 cut(s) 209, 236
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 378, 515, 572, 578
NarI GGCGCC 1 cut(s) 564
NciI CCSGG 1 cut(s) 236
NdeII GATC 3 cut(s) 129, 511, 539
NlaIII CATG 3 cut(s) 20, 142, 292
NlaIV GGNNCC 2 cut(s) 216, 565
NmuCI GTSAC 2 cut(s) 112, 319
NspI RCATGY 2 cut(s) 20, 142
PaeI GCATGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 4 cut(s) 341, 363, 423, 602
PfeI GAWTC 3 cut(s) 147, 410, 602
PflFI GACNNNGTC 2 cut(s) 278, 362
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 8 cut(s) 224, 252, 317, 422, 425, 568, 571, 574
PluTI GGCGCC 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 216, 565
PsyI GACNNNGTC 2 cut(s) 278, 362
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 8 cut(s) 223, 251, 316, 421, 424, 567, 570, 573
Sau3AI GATC 3 cut(s) 129, 511, 539
ScrFI CCNGG 2 cut(s) 209, 236
SduI GDGCHC 4 cut(s) 200, 344, 374, 499
SetI ASST 9 cut(s) 75, 102, 108, 123, 210, 279, 300, 305, 344
SexAI ACCWGGT 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 137
SphI GCATGC 1 cut(s) 142
SspDI GGCGCC 1 cut(s) 563
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 207, 234
TaaI ACNGT 2 cut(s) 112, 554
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 366, 374, 605
TauI GCSGC 7 cut(s) 225, 253, 423, 426, 569, 572, 575
TfiI GAWTC 3 cut(s) 147, 410, 602
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 2 cut(s) 112, 319
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 112, 319
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 485
Tth111I GACNNNGTC 2 cut(s) 278, 362
XceI RCATGY 2 cut(s) 20, 142
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.