Rmu_sc0001171.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001171.1
OG0002484
Physical Location & Seq
Forward (+)
14163 .. 15298
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001171.1_g000003.1.cds

Sequence Viewer

Length: 453 bp
atggcggggaaagctaagaataacgcgaatgcgaagatgtctctggatgattacctccttctcctccagtctggctcccacctccacctcaacgtcagccatctcaatcagaagcttctgagcgacgccgtgaactcactgcagctggtgaacccgtgccgctccacgcttagggactacatctcgccgttggtgacgacgaagatggaggacgtcttcgccgacctcagcgatctcaactggcaagactgttgcatcaccgccatccaaaccctcagttcgtgggaggaccagtcccctcctccccgaaacggcgccgtccagttccaacactactcgccgtccaccgcagcccacagcgtgatcgtttctgctcccggaccgaccaaaaagagatcggcgaggaagaggaagcggactgctaaagtggccgatctggtaaatttcgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.5

Weight (kDa)

9.27

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 1 cut(s) 26
AciI CCGC 5 cut(s) 5, 160, 261, 348, 415
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 442
AcyI GRCGYC 3 cut(s) 126, 213, 315
AdeI CACNNNGTG 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 171, 311
AluBI AGCT 3 cut(s) 14, 115, 145
AluI AGCT 3 cut(s) 14, 115, 145
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 142, 350
ApoI RAATTY 1 cut(s) 442
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 289, 380
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 3 cut(s) 160, 205, 250
AvaII GGWCC 2 cut(s) 289, 380
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 154, 362
BccI CCATC 3 cut(s) 108, 199, 272
BceAI ACGGC 5 cut(s) 113, 172, 302, 325, 328
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 3 cut(s) 143, 160, 351
BlsI GCNGC 3 cut(s) 144, 161, 352
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 2 cut(s) 289, 380
BmgT120I GGNCC 2 cut(s) 289, 380
BmiI GGNNCC 2 cut(s) 76, 316
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 2 cut(s) 170, 227
BpuMI CCSGG 1 cut(s) 378
BsaHI GRCGYC 3 cut(s) 126, 213, 315
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 311
Bse1I ACTGG 4 cut(s) 67, 245, 292, 322
BseGI GGATG 2 cut(s) 52, 264
BseLI CCNNNNNNNGG 2 cut(s) 171, 311
BseMII CTCAG 3 cut(s) 110, 241, 289
BseNI ACTGG 4 cut(s) 67, 245, 292, 322
BseRI GAGGAG 2 cut(s) 53, 291
BseXI GCAGC 2 cut(s) 154, 362
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 431
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 188, 280
BslI CCNNNNNNNGG 2 cut(s) 171, 311
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 2 cut(s) 188, 280
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 431
Bsp143I GATC 4 cut(s) 232, 363, 395, 433
BspACI CCGC 5 cut(s) 5, 160, 261, 348, 415
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 3 cut(s) 111, 240, 288
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 76, 316
BspMAI CTGCAG 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 162
BsrI ACTGG 4 cut(s) 67, 245, 292, 322
BssMI GATC 4 cut(s) 232, 363, 395, 433
BssNI GRCGYC 3 cut(s) 126, 213, 315
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 401
BstACI GRCGYC 3 cut(s) 126, 213, 315
BstDEI CTNAG 5 cut(s) 15, 119, 170, 227, 275
BstF5I GGATG 2 cut(s) 52, 264
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 4 cut(s) 235, 366, 398, 436
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 4 cut(s) 232, 363, 395, 433
BstMWI GCNNNNNNNGC 2 cut(s) 11, 428
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 140
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 154, 362
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 431
BtsCI GGATG 2 cut(s) 52, 264
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 289, 380
CpoI CGGWCCG 1 cut(s) 380
CseI GACGC 1 cut(s) 134
CspI CGGWCCG 1 cut(s) 380
CviJI RGCY 7 cut(s) 14, 75, 99, 115, 145, 353, 431
CviKI_1 RGCY 7 cut(s) 14, 75, 99, 115, 145, 353, 431
DdeI CTNAG 5 cut(s) 15, 119, 170, 227, 275
DinI GGCGCC 1 cut(s) 316
DpnI GATC 4 cut(s) 234, 365, 397, 435
DpnII GATC 4 cut(s) 232, 363, 395, 433
DraIII CACNNNGTG 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 289, 380
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaqI GGGAC 2 cut(s) 188, 280
Fnu4HI GCNGC 3 cut(s) 143, 160, 351
FokI GGATG 2 cut(s) 59, 251
Fsp4HI GCNGC 3 cut(s) 143, 160, 351
GlaI GCGC 1 cut(s) 316
GluI GCNGC 3 cut(s) 143, 160, 351
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 3 cut(s) 126, 213, 315
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 113
HpaII CCGG 1 cut(s) 378
HphI GGTGA 3 cut(s) 160, 205, 250
Hpy166II GTNNAC 3 cut(s) 133, 151, 345
Hpy188I TCNGA 2 cut(s) 111, 120
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 3 cut(s) 133, 151, 345
Hpy99I CGWCG 2 cut(s) 128, 202
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 93, 213
HpyCH4V TGCA 2 cut(s) 142, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 428
HpyF3I CTNAG 5 cut(s) 15, 119, 170, 227, 275
HpySE526I ACGT 2 cut(s) 93, 213
Hsp92I GRCGYC 3 cut(s) 126, 213, 315
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
Kzo9I GATC 4 cut(s) 232, 363, 395, 433
LmnI GCTCC 3 cut(s) 80, 167, 379
LpnPI CCDG 9 cut(s) 29, 57, 80, 131, 226, 305, 335, 391, 422
Lsp1109I GCAGC 2 cut(s) 154, 362
LweI GCATC 1 cut(s) 264
MaeII ACGT 2 cut(s) 93, 213
MaeIII GTNAC 1 cut(s) 193
MalI GATC 4 cut(s) 234, 365, 397, 435
MbiI CCGCTC 1 cut(s) 162
MboI GATC 4 cut(s) 232, 363, 395, 433
MboII GAAGA 4 cut(s) 46, 208, 214, 418
MluCI AATT 1 cut(s) 442
Mly113I GGCGCC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 11, 428
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 1 cut(s) 378
NdeII GATC 4 cut(s) 232, 363, 395, 433
NlaIV GGNNCC 2 cut(s) 76, 316
NmuCI GTSAC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 144, 161, 352
PluTI GGCGCC 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 76, 316
PspPI GGNCC 2 cut(s) 289, 380
PstI CTGCAG 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 145
Rsr2I CGGWCCG 1 cut(s) 380
RsrII CGGWCCG 1 cut(s) 380
SatI GCNGC 3 cut(s) 143, 160, 351
Sau3AI GATC 4 cut(s) 232, 363, 395, 433
Sau96I GGNCC 2 cut(s) 289, 380
ScrFI CCNGG 1 cut(s) 378
SetI ASST 9 cut(s) 16, 57, 84, 90, 96, 117, 147, 216, 228
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 140
SfoI GGCGCC 1 cut(s) 316
SinI GGWCC 2 cut(s) 289, 380
Sse9I AATT 1 cut(s) 442
SsiI CCGC 5 cut(s) 5, 160, 261, 348, 415
SspDI GGCGCC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 96, 216
TaqII GACCGA 1 cut(s) 397
TasI AATT 1 cut(s) 442
TauI GCSGC 1 cut(s) 162
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 142, 350
Tsp45I GTSAC 1 cut(s) 193
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 289, 380
XapI RAATTY 1 cut(s) 442
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.